RadishBase

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Information for unigene UN06726

FASTA Sequence

Unigene ID: UN06726	Length: 1612	SSR
GGAACACAGAGTTTGAGTGCAAAACCAGATCTTTCTCTCCTTGTCCTTCTCCCCGATCTTCTTCTCAACTGTAAGGATCTTCAAGT TTTCTTCTTTTTTTACTTTTTTTCAGATTCGGGAGCTTCTTGTCTTGATCTATAGCTCTTCGCTCACTAAGGCTACTGTTGTGGGA ACGCGAATGGGTCATTGCGTAATTCACCCCCTCCCCCCCCTTTTTTTTCTTCTTCAAATCCTTAGAGATCTATCTTTTATTATTGA TATCGCGAATGGATTTTTGGTTGTTTGATGTCTCTTGCTACTTGGTTTTTTGAATAATTGTGTGTAATGTATTTAGGACTAGTGGG AAGATTTGATGTTGCATTGTGTACTCTCTGAGTTAGATCCCACCATTTTACTTAGGTTCATTCTTCTATTTTTATTCTCATTTTAA AGAAGCCAGGTTATGTTCTTGATCTCTCTCGCACTCCACAATGATGCTCTTGATTCTTAGCTCCATTTTTTTTATTTTGTTCCGTA AAAAGCAAAAGAGAAGATCCAAGTAAATTAAAAGAATCCCAAGGAAGAGGAAGGTGATGTTTTCTCTTATGCATGGACTCTGGACT TACATGTTCAGCAAGACTGAGTTCCATGTCCTCATTCTTGGTATCGACAAAGCTGGCAAAACGACGTTTTTGGAGAAACTGAAGAC GATTTACTCAATCTCTGAAGGTCTTCCACATGATCGTATTGTTCCTACTGTTGGCCTTAACATCGGTCGTATTGAAGTCGCCAATG CTAAAATCGTCTTCTGGGACTTTGGTGGTCAGGTAAGTCGGAAATGTTCAATCCCTTCACTTACATACATATATAAAATATCCCTT CACTTACATATATATATATGATTGATTGTGTTTGAGCCTTTCATAAGAGCTCTCTCTTGGTCCGCTTAGGCCATATACTGCTGTTA CCGCCAATGGACTTAGAATGTACGAGATATCTTGAATAGGAGCTAGCTAGGATAACAACATTGTTTAGACTGCTTGTTGATTGTGA AAGAAGTAGTCTTTGTAATCTAATAATAATAGCCATGCCTTATGGCAGCCTGGTTTGCGTTCGATTTGGGAGAAGTATTATGAAGA AGCACACGCATTGATATATTTGATCGACGCGGCTTGCCCATCTCGCTTTGAAGACTCAAAATTTGCTCTAGAGAAAGCCCTGCGGC ATGAGGATTTGCAAGGAGCGCCTCTTTTGATATTGGCAAACAAGCAAGATCTCCCAAATGCTGTCTCGGCTGAGGAGCTAGACCGA TACCTGGATCTCAAGAAACTAGACGAAAGGGTGTACATGTTTGAAGCAGCTTCTGGATATGATGGGCGAGGAATCAAAGAGAGCAT AGAATGGCTGGTGGGAGTGATGGAGAGAAGCAAAAGAACCGAAACATTAAGAGCCCGTGCAGGATACGTTCCTGTCCCAACTTCCT AGACTTGAAAGAAGTGTTCACAAACTCAATTCTCAAACCAACTGTTTTCTGTCAGAAACATTTGTAGATAAAAAAAAATCGTGCGT TGTTTTGTGTTAGCACATGATAAGTAGGGCTAGTAATAATCCTTATTATATTTGCCTTTACAAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002864157 hypothetical protein ARALYDRAFT_495289 [Arabidopsis lyrata subsp. lyrata]	634	1e-063
NP_200034 GTP-binding protein 1 [Arabidopsis thaliana]	619	8e-062
AAM62873 GTP-binding protein-like [Arabidopsis thaliana]	610	9e-061
XP_002322456 predicted protein [Populus trichocarpa]	539	2e-052
XP_002318238 predicted protein [Populus trichocarpa]	536	3e-052

Swiss-Prot top hits (Blast detail)	Score	e value
Q54UF1 ADP-ribosylation factor-like protein 2	232	3e-018
P38116 ADP-ribosylation factor-like protein 1	205	3e-015
Q25761 ADP-ribosylation factor 1	200	1e-014
P11076 ADP-ribosylation factor 1	200	1e-014
P34728 ADP-ribosylation factor	200	1e-014

TrEMBL top hits (Blast detail)	Score	e value
Q38921 At5g52210	619	6e-062
Q8LE31 GTP-binding protein-like	610	6e-061
B9ID51 Predicted protein	539	1e-052
A9PIP7 Putative uncharacterized protein	536	2e-052
B9I4B8 Predicted protein	536	2e-052

Arabidopsis top hits (Blast detail)	Score	e value
AT5G52210.1 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1); GTP binding	620	2e-064
AT5G52210.2 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1); GTP binding	620	2e-064
AT2G18390.1 TTN5 (TITAN 5); GTP binding / GTPase	205	3e-016
AT2G15310.1 ATARFB1A (ADP-ribosylation factor B1A); GTP binding	190	2e-014
AT1G70490.1 ARFA1D; GTP binding / phospholipase activator/ protein binding	188	3e-014

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			33%


8	2			67%

Unigene Members	Member information