Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06775

FASTA Sequence
Unigene ID: UN06775Length: 849 SSR 
ACACTCTCTCTCTATCTCTACAAAAGCATCACTCTTTACCTTCTTCTTCTCTCTACTCTAACTCAATAGAGAGAGATGAAAAAAAA
AGCCATGGATGGGTATGAAGCAACTAGGATTGTGCTCTCTCGTATCCAAGCTTTGGACCCAGCTAACGCATCAAAGATCATGGGTC
TTCTCCTTCTCCAAGATCACGGTGAGAAAGAGATGATAAGACTAGCTTTTGGCCCGGAGAATCTTGTTCACTCAGTGATAGCGAAA
GCCAAGAAAGAGTTGGGTCTCATGAGCTGTTCAAGGCCTCTTTGGTGTCAAGAGGAGTTGATAAGCCCTAAGAACAACGGCCGTGG
CTCTTCTCTCAACCCGGCCTCTCTGCCCTTCTACGCTAACGGAGGAGGAAGATCTTTTACGGATATGACCAACGAGTTCGAGTTCA
TTGATGATGTGAACTTGGGCTCTGTGCATGCCAGAAGTGGTAGCTGCGGTCTTGACGGTTTAGGGTTTGGTGATTCTGAGTTAGGG
TTTGGAGGTGTACCCTGTTCTTATTTCGCTAGAGGCTTCTGCAAAAACGGAAGTAGCTGCAGATTCGTCCACAGTGATGGAGGAGG
TGAACTTGTTGGCTCCCCAAGCAGAATGGAGCTTCTTAGGTCTAACTCGGTACCTCCAAGACTCGCTCACCAGTTCATGACTCGCT
CTTCTTTCTCTCCTAAAGGTGTTAACATGCAGAACACCGATGCTCAAAGAGCTGCTGCTGCTGCTTTGATGATGGGAGATGAACTG
CAGAAGCTTGGAGATGGAGACTGAGAGGATGATCTTTCTGCATGGCTTGTCTGCTTCAGACGATCTATTTGACAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877836 hypothetical protein ARALYDRAFT_485553 [Arabidopsis lyrata subsp. lyrata]9681e-102
AAM66020 unknown [Arabidopsis thaliana]9625e-102
NP_190763 zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana]9572e-101
AAL87320 unknown protein [Arabidopsis thaliana]9572e-101
CBI28616 unnamed protein product [Vitis vinifera]3863e-035

Swiss-Prot top hits (Blast detail)Scoree value
Q9SV09 Zinc finger CCCH domain-containing protein 469579e-103
Q0D3J9 Zinc finger CCCH domain-containing protein 532661e-022
Q10M00 Zinc finger CCCH domain-containing protein 222525e-021
Q10LZ9 Zinc finger CCCH domain-containing protein 232525e-021
Q94CJ8 Zinc finger CCCH domain-containing protein 551423e-008

TrEMBL top hits (Blast detail)Scoree value
C0PH77 Putative uncharacterized protein2877e-024
B9NAY1 Predicted protein2851e-023
A5B9W5 Putative uncharacterized protein2724e-022
Q6NKZ1 At3g634502724e-022
Q9LY70 Putative uncharacterized protein MAA21_802724e-022

Arabidopsis top hits (Blast detail)Scoree value
AT3G51950.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein9578e-104
AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein9578e-104
AT3G63450.1 RNA binding / nucleic acid binding / nucleotide binding2722e-024
AT3G63450.2 RNA binding / nucleic acid binding / nucleotide binding2722e-024
AT3G21100.2 RNA binding / nucleic acid binding / nucleotide binding1593e-011

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  25%
 
92  50%
 
71  25%

Unigene MembersMember information