RadishBase

| | | |

Information for unigene UN06828

FASTA Sequence

Unigene ID: UN06828	Length: 1275	SSR
AAGTTGAAATTATTAGAATGAAAAATAACGAATAAGAAGAACATGAAGGACACTGTTTATATAATTCCTTCAGAAAAAGATATGGA GAAAAATACTATGACAAGAGTATCATAAAGAGATAGACAGTCTTGAGTCGTCTTCTTGGGGCTCAAGTCATAGCTCTGATTGAGCA ATAAATGAATTAGCTGTTTGTAATTTCAGGTGCAGCGAAGAGAGAGAGAGAGATAAAAATGTGAAGATTGTACAAATTGGGAAAAT GCAAGATATCAAGAAGATATTGGTTCTTTGTAGTTGCTGGTTGTGATTTCAGGTGCAGCTGTTGTTGCCTCACCTTCTCCTGGTAC TTGCTCTGGTGCTTCAGATTCTGTGAAAGAAGAGTGTGGTCCTTGGAGTGGAGGTGCAAAAGAGGAATTGGATGGGTAAACGAAGA AAGGAGAAGTAAACCGTTGATGATGATGTTGTTGAGGGTTATATGGTTGAGGAAGATGATGATGTTGGTATGGCATTCTAGGAGCT TGAAGAGAATAGCCATAATAGTAAGGAGAAGGCATGATGGTTGCTGATGATGATGATGGTGATGTTGCTCCTCCTCCATAGAGTTG TTGCTGCTGTTGATAGTATTGTGCTTGTTGCAACTGTGTGTTGTACAAAGCTTGGTGGTATCCAAACTGATCAGGGTTATAGGTGT ACCCATAGGATGGATACATGAGCTGGTGGGCAGCTGCAGCCGGTGGCAGCGGTGCAGCCATCCCTGTATAGGCTGATGGTCCTCCA CTTTGGTACTGACTTGGACTTCCTGTTTGTCCTCGACCTCGAGGTGGCGATGGTCTAGGCCGTCCAAAAGAAGCAATATTACAATT AGCTTTTCTTCCGTCGATCACCGGATTTGGCTCAGCCACGGCTCTCGTTGCAGAATCCGCCTCGCGAAACGTCACGAAACCATAGC CTTTAGATTTTCCTGTGTTTTTATCAGTGATAATGACGGCTTCAAGAATCTCTCCGAACTGATCGAAGTAACGACGCATCTCTTCG GTGGGAGTCTCCCATGCTAATCCTCCAACAAAGACTTTGGTGTAAGTCGTGTCTCCGAACGGCGATCGGTAATAGCTCGTTTGAGA CATTTGTTTTGAATAGTTATTAGAATTTAACAGCAAATAATATGGTGTTTCCCGATGATGATTTTGATCATACAACCCAAACAAGA AACAAAAAAAGATTGAATAAATAAATTAAATATGTAAAGAAATGAAGAGGAACAAGAGAAAGGAAAGAGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565175 RNA recognition motif-containing protein [Arabidopsis thaliana]	1383	2e-150
AAF71806 F3F9.20 [Arabidopsis thaliana]	1357	2e-147
XP_002887731 hypothetical protein ARALYDRAFT_476993 [Arabidopsis lyrata subsp. lyrata]	1326	6e-144
NP_974169 RNA recognition motif-containing protein [Arabidopsis thaliana]	1267	4e-137
XP_002890509 hypothetical protein ARALYDRAFT_313119 [Arabidopsis lyrata subsp. lyrata]	1004	1e-106

Swiss-Prot top hits (Blast detail)	Score	e value
Q5ZMA3 RNA-binding protein 24	298	4e-026
Q76LC6 RNA-binding protein 24	295	9e-026
Q9BX46 RNA-binding protein 24	283	2e-024
Q6GQD3 RNA-binding protein 24-A	281	4e-024
Q9I8B3 RNA-binding protein 24-B	281	4e-024

TrEMBL top hits (Blast detail)	Score	e value
Q8LF90 At1g78260	1383	1e-150
Q9M9E6 F3F9.20	1357	1e-147
Q3ECB3 Putative uncharacterized protein At1g78260	1267	3e-137
Q9LME7 T16E15.6 protein	987	9e-105
Q8LA11 At1g22330	677	8e-069

Arabidopsis top hits (Blast detail)	Score	e value
AT1G78260.1 RNA recognition motif (RRM)-containing protein	1384	4e-153
AT1G78260.2 RNA recognition motif (RRM)-containing protein	1267	2e-139
AT1G22330.1 RNA binding / nucleic acid binding / nucleotide binding	987	5e-107
AT2G46780.1 RNA binding / nucleic acid binding / nucleotide binding	398	9e-039
AT1G20880.1 RNA recognition motif (RRM)-containing protein	397	1e-038

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	2			50%


9	2			50%

Unigene Members	Member information