Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06861

FASTA Sequence
Unigene ID: UN06861Length: 1442 SSR 
ACTAGAAAATTAACTAAAATTTACTTCCCACAACATGATTAATTCATTACATCATACTCCAGAGGACTAAAAGTAAAAAAAGAAAA
GAAAAATCCACACAAATGAGGTTCAGTACAAAATAAAATTTGCAAAATTCCCAACAGATAGAAAAAAATGTACAAACAAAAAGTAT
TTTTTAAAAAACTACTTAAAAATAATCAGCTCTGTTTTCAGACCGACTTTAATTAGTCATAGCGAGCCTAAATTCTGGAGCGGTCC
GCTCGAAACCTCTATATGAATTCAGCTTTAGCCAAACCGGTTTAACACCGGTACGGTCAATGATTGTGTTACATTGAACAGCCACC
AGTAACCGGTAAGGTGTTGGTAAATGGCATTGTAGCTTTAATACCATCCAACATAGTCTCAGAGATTCCTCCACACTTGATCGTCT
GCTCCAAAATATTCACTAGCTGCATGAATATCTCCATCCTCGTCACATCACGACTCGCCTCAACAGTGAAGCGAGCCCAAATCTTG
TTTATTTGAGTTTCAATGACACCCTTCAAGATCGTCATGCCTAAGCTTCTGATCCAATCAGCAATTTCTAGAAAGAATCCCCGTTG
TTCGCATAACATCTCAACTAGGAAAATGCGAGGAGGGTTTAGATCCTCTACTACAATAGGACACCTTAGAGACTTTGACCCTACTT
CAAAAGCCCATGTTGCTCCTCCTCCTCCTCCTCCTTCAAACGCACCTTCCTCTTTCATTATTATCTTGGATTCCCCAGTTTCTTTC
ACCTTATCAGCATGCTTAGAGACGTTTTGCAAGAAGAGCATGTGTTTGATTGTACGTTCTAGTAGCGCATCTATGCTACACTTTGC
ACCGTTGGGTATGATTTCACGCAACTCCTTGACACGATCTTGGATCATCTGCCTATCTTTAGGCCTTGGTCTTGGATTCTCTCCCG
GTTTAAGCCTTTTACGGTTATTATTAACCGGTTTTGTAGTTTCATTCTTGTTAACCATCATCCTTGGACTCTCCTCACGCTTTAAG
CTGTGAGCTTGTTCAACCCAAGAACTGATCTGAGACCCGTAAACCACCGATGATGGCCCCACCACGTGTGTGATCCCTCGAGGGCT
ACTGTTACTGTGAGATGGAGTGGTAACCGAGGAGTTATTACTAGCTTTGGTCATACTCGTTTTGCAAGACTCAGAAGTCTCATCCG
AAATCTGCTTCGTGGAGGAGGAGCAAGCACCAGAGACCACAGCATCTAACAGATGATCCGTCCCCGAAAGCTCATAACCAAACTCG
GAATCTTGAACGATCCTAAAGTCAGACAACTCCCTAGTGAGCACATCTGAAACTCCCCAACCGTTCTTATTATCATCCAAACCCAA
CATACCAAACAAGTCGTCGCTTCGTTTGGAACCAGAGTCTTCACGTGGGACTGCTGCATCCACAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33802 unnamed protein product [Thellungiella halophila]14324e-156
NP_565640 transcription factor-related protein [Arabidopsis thaliana]13795e-150
BAH19848 AT2G27230 [Arabidopsis thaliana]13752e-149
XP_002879076 hypothetical protein ARALYDRAFT_481620 [Arabidopsis lyrata subsp. lyrata]13634e-148
BAF01612 hypothetical protein [Arabidopsis thaliana]12684e-137

Swiss-Prot top hits (Blast detail)Scoree value
Q7XJU0 Uncharacterized basic helix-loop-helix protein At1g646254761e-046
P0C7P8 Uncharacterized basic helix-loop-helix protein At1g061504608e-045

TrEMBL top hits (Blast detail)Scoree value
Q9XIN0 BHLH transcription factor13794e-150
B9DGI1 AT2G27230 protein13751e-149
Q0WMN8 Putative uncharacterized protein At2g27230 (Fragment)12683e-137
B9RIZ8 Expressed protein, putative8175e-085
B9GHM8 Predicted protein8078e-084

Arabidopsis top hits (Blast detail)Scoree value
AT2G27230.1 LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor13854e-153
AT2G27230.2 LHW (LONESOME HIGHWAY); protein homodimerization/ transcription activator/ transcription factor13854e-153
AT2G31280.1 basic helix-loop-helix (bHLH) protein-related4884e-049
AT1G64625.1 transcription factor4761e-047
AT1G64625.2 transcription factor4761e-047

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  33%
 
92  67%

Unigene MembersMember information