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Information for unigene UN06878
| FASTA Sequence |
| Unigene ID: UN06878 | Length: 860 |
SSR | | TAATACATCAGTTTTTTCTCCTACTATACATAAACACTAAAAGTCATCATCATCAAAACACAAGCAACATCTTGAGTTGAATAAAA
AAGTTGGGAGAAAAAGAACGTGTTTGTAACTTAAGAGATAAAAATAGCGATCTTTTGAATTACTCAGGGCTTGGGAGGGTTGTTGG
AATTATCAGATTTCCTCTTGAGGACAATGACCCAAGTTACAGCTTCCAAGAGCAAAGTAATGCCTCCCAAAGTCGCAATAACAGCG
ATATAAGCGGTCTTGTAAGTATGCTCTGGGTTCAAGATGCTAAGACCTTTGAAAACATTGATGATTCCAAGGATAAGGATAGAGTA
TCCAACTCCATGGTGGTAAATATTCCAAAAGAATCTCAACTTGTGGTCCTTCCGTGGCCGCAACAGCATCGCAAACATCTGAAGCG
TGGCCATAGCGAAGAGAGCAATGCCGATGTTGCGATGACTGTTGAATGTAATTCCTTTAGACTCGGAGCCGAGCTTGAGTCCGGTG
GCCCATCCGGCAACACCGATGACGTAAGCAGAGAACTGACATGACACGTGGAGGTAAAACCAAGCAGGATCCGCGGATTCAAAAAT
TCTCATGTATCTTGCTATCATTGCTCCAATCGGAAACAAAATTCCCCAACTCACCGCATTCAATATCCCATGGATGTTTCTCTTAC
GAATCCTTGAGTTTCCAGCACCGCCGCCGCCGCCGGAGGCAGATACCCCTGTAGTGGCGCCACTCAAATCGAGCGATCCAACGGTG
TTAATATTCGGAGGGTTAAAATCGTGTGGCTGTATCCTCCCGTTAGGTGACACTCCAGGTCCAACCTGCCAAACCTGGTTAACCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_193034 putative auxin-responsive protein [Arabidopsis thaliana] | 1058 | 4e-113 |
| XP_002863188 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1057 | 5e-113 |
| AAM65781 unknown [Arabidopsis thaliana] | 1055 | 9e-113 |
| XP_002883602 predicted protein [Arabidopsis lyrata subsp. lyrata] | 950 | 1e-100 |
| NP_566763 putative auxin-responsive protein [Arabidopsis thaliana] | 924 | 1e-097 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SV71 Putative uncharacterized protein AT4g12980 | 1058 | 3e-113 |
| Q8L9T0 Putative uncharacterized protein | 1055 | 6e-113 |
| Q9LSE7 AT3g25290/MJL12_25 | 924 | 9e-098 |
| B9T491 Dopamine beta-monooxygenase, putative | 831 | 6e-087 |
| A9PDC9 Putative uncharacterized protein | 812 | 9e-085 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G12980.1 auxin-responsive protein, putative | 1058 | 2e-115 |
| AT3G25290.1 auxin-responsive family protein | 924 | 6e-100 |
| AT3G25290.2 auxin-responsive family protein | 924 | 6e-100 |
| AT4G17280.1 INVOLVED IN: multicellular organismal development; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: auxin-responsive protein, putative (TAIR:AT5G47530.1); Has 203 Blast hits to 203 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 712 | 2e-075 |
| AT5G47530.1 auxin-responsive protein, putative | 703 | 2e-074 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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