 |
Information for unigene UN06881
| FASTA Sequence |
| Unigene ID: UN06881 | Length: 1278 |
SSR | | GAGTTTTTAAAATATGTAGATCCTATAATACACTTGCCTTTTAGTTCAGTAGGCAAATACGTACACAGAAAGTCTTAAAACTTGAT
TGAAAATCTTACAGTGTACAAAATCCAAAGAAGAAGGATATATAAAAGAGTATTCTATATAAAACTGTAAGGAACAAGTACAAGTA
ACAGACATCACATATAATTACTGCTTACAACTAAAAAGAGTTTCCAAGTAGAGAATCATCATCAAACACACAACACACTACTTCTC
TCTCTCTCTCTCAACACATTTAGCTTCTCTCTCCATCATCTTAGGCACGAATCATCACTTTGCAGTTGTTGTATCTTCCTTTCAGT
GTCTTCATAGCTTCCTCTGCAAAAGCTTGAGCTACTTCTGCTTCCGCTTCTGCTAACTCAGCATCCTTTGCAGCTTCTTCAGCCGC
TGCCATGGCAGCTTCTGCCTCTGCAACTGCCTGTGCTGCAATCGCTGCCGCTTCTTGTACGCTCATAGTCTTCATTCTGTCTAACT
CCGGATCAATCTGTGCGTTTGCCTCAACACTGACTTCATCTCCGTCTGTTTTAGGGGAAGGCAAAGAGAGACTTCTCTGTTTTCCA
GAAGATGACCCCAACTGTTTTCTTCTGTGGGGAGACAATGGAGTGGAGTTTGGAATCCTATACTTGCGCTTAACCTTGATAAGTTT
CCGGCGAGCTGTCAAGTACTTTAGCTTGGCTGACAGCAACCGTTTGAAGTCTGGTGGAGCGTGATATTGTTCCTCAATGTAGGTAC
CAATTGATGTTTTGTTAGAGCCACCGGGCTCTTTTATGGTAGATATTGCTTCCATTATGAGGCTATCCAGCCTTACATTAGGTGCA
GAAGTGCCAGTGGCATCTTCTTCTGCCATTTCTTCATCACTCTGCGGCGGGCTAGAATCGGCGGCAAGCGAGGTATCTTCCTGTTT
AGGAAGAGAGGGCGTCCTTTTAACACCAACCCTAGACTTCTCACGCGATCCCCACCCATTCAGCATGACACTCATGTTCCTCCATT
TGTCCTTAAGATCAACATTGGAACGGAGGAACAAGACTTCACTAAAGTCAGGGTCTTTGAGAATAGTGCGCCATTTGCCAGGTCCA
TGCTTGATAACGCCGGACCTTAGAGCTGTCTCTTCTTCTTGAGTCCATTTCTGCTTAGGAGCACCCATCACGAACCCTGTTCAGAT
TTCTGAGAGTAATTTTGATCTTCACGAGACCAACTCCAACTTCTCTTGGTTGAATTTTCTTTTTGGTAAAAATT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894224 telomere repeat binding factor 1 [Arabidopsis lyrata subsp. lyrata] | 1119 | 6e-120 |
| AAL73438 telomere repeat binding factor 1 [Arabidopsis thaliana] | 1112 | 4e-119 |
| NP_564559 telomere repeat binding factor 1 [Arabidopsis thaliana] | 1108 | 1e-118 |
| AAM65540 DNA-binding protein PcMYB1, putative [Arabidopsis thaliana] | 1104 | 3e-118 |
| AAF76448 Contains similarity to DNA-binding protein MYB1 from Petroselinum crispum gi|7488946 and contains MYB-DNA-binding PF|00249 and linker-Histone PF|00538 domains [Arabidopsis thaliana] | 1091 | 1e-116 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8VX39 Telomere repeat binding factor 1 | 1112 | 3e-119 |
| Q8VWK4 At1g49950 | 1108 | 8e-119 |
| Q8LA70 DNA-binding protein PcMYB1, putative | 1104 | 2e-118 |
| Q9LPL9 F2J10.16 protein | 1091 | 7e-117 |
| B9HN09 Single myb histone | 811 | 2e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49950.3 DNA-binding protein, putative | 1109 | 3e-121 |
| AT1G49950.2 DNA-binding protein, putative | 1109 | 3e-121 |
| AT1G49950.1 DNA-binding protein, putative | 1109 | 3e-121 |
| AT3G49850.1 TRB3 (TELOMERE REPEAT BINDING FACTOR 3); DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor | 569 | 1e-058 |
| AT5G67580.1 TRB2; DNA binding / double-stranded telomeric DNA binding / protein homodimerization/ single-stranded telomeric DNA binding / transcription factor | 317 | 2e-029 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
