Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN06933

FASTA Sequence
Unigene ID: UN06933Length: 792 SSR 
GGAAAGTAGCCGCCTCATCTTCATCGTCTCACCTCCTTGGCTCTCTCTCTCTCTCTCTCTCGATGGGAAGCCCGATTTAGGGTTTA
TTTCGATTTTATCTATCGATTTGACCATCGCCACAACGCTCTAGACTCTTCCTGTTTTAAAAGACAGTTTCTTTTTAGAGAATTAT
TATGCCGAAAGAGAGGAAAGACCGATCTGTATCTCACGAAAGGTTAAGAGCATCATCATCGCCTTTGTATTGTGAGTCAAGCCGTG
CTTTGAAGAAGCCGAGTGAGAAGCAAGTTAAGGAATGGGAAGAAGCTCGATGTCCCGTCTGTATGGAACATCCTCACAACGGCATC
CTTCTCATTTGCTCTTCCTTTGATAAAGGTTGCCGTCCTTACATGTGTGACACTAGCCGCCGTCATTCCAACTGTTTCGATCAGTA
CCGTAAAGCTTCTAAACAGACACCAACTGAGACTGAAGGTGGTGGTGGTGTAGCTTCAGGCTCCAACACTGTAGATTTAAGAGAAG
AGGCTGCATCTGAGGTAACAGAGGGAGAAAAAACCAAACCGAAGCTTACTTGTCCGTTATGCCGTGGACATATAAAAGAATGGGTG
GCTGTTGAAGATGCTCGAGGTTTCATGAACGCGAAACGTAGAGCTGTTCTTCTGAGAGTTGTGAGTTCAGTGGAACTTACTCTGAT
CTGAGAAGCACGCGAGCTCCAGCATCCAGGGGTAAGCCATCAGAAGCTGATCAGAGAGACAGAGAAGCTGGAGAGCTAGAGAGCAG
AGGGATTTAGGGATTGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875291 hypothetical protein ARALYDRAFT_904770 [Arabidopsis lyrata subsp. lyrata]3872e-035
NP_566784 uncharacterized protein [Arabidopsis thaliana]3828e-035
CBI28161 unnamed protein product [Vitis vinifera]3424e-030
XP_002285038 PREDICTED: hypothetical protein [Vitis vinifera]3415e-030
XP_002531527 conserved hypothetical protein [Ricinus communis]3406e-030

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LUA0 AT3g25910/MPE11_63826e-035
B9SZV8 Putative uncharacterized protein3404e-030
C0PHC8 Putative uncharacterized protein3361e-029
A9SF80 Predicted protein (Fragment)3352e-029
B4G0E9 Putative uncharacterized protein3333e-029

Arabidopsis top hits (Blast detail)Scoree value
AT3G25910.1 zinc ion binding3823e-037
AT1G15430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2515e-022
AT1G15430.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G80220.1); Has 144 Blast hits to 135 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2515e-022
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2221e-018
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2221e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information