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Information for unigene UN06947
| FASTA Sequence |
| Unigene ID: UN06947 | Length: 1117 |
SSR | | GGTTACGGAGAGGGTGAAGAACACTTTGATATTCAATACGTTTGTGTTGTGTCAGGTGTTTAATGAGTTTAACGCGAGGAGTCTTG
AGAAGAAGAATGTTTTTAAAGGGTTGCACAAGAATAGGCTCTTCGTTGGGATTATAGTGGTGACTGTGGTCTTGCAAGTTGTGATG
GTTGAGTTTCTGAAGAGGTTTGCTGATACCGAGAGGCTGAATTGGGGTCAATGGGGAGTTTGCTTGGCCATTGCGGCTGCGTCGTG
GCCTATCGGATGGTTGGTGAAGTCTGTTCCGGTGCCGGAGAAGCACTTCTTTAGCTACCTGAAATGGAAGAAGAGATCTTGAGAAG
CTTTGAAATTGATTTGTAAATGGGTTTTTAAGTATTTGTTTTTTTTTTTTCTTATCTGATTTGAATAAACTTTGTAAAGGTTTTAT
TTTATTTATTTATTTATTTACATAACGTTATATATATTCAGATTACAAATTATTTTAGAACGGGCCAAGATTGATTCCTTCAAGGC
TAGCTAAAGCAATGAACTCCTTCTCTGCCTCTTTCCACTGGATATCAAGCACAACGAAACGAACCGTGGAACCGATCTGAATCCGG
GACATGTTCTCGTTCACGAACAACGGGTTTCCTTGTCCAAAGTAGTCGTAACCAGGCATCTTATAATGTGATAAGTAAACGTTTTC
ACAAGGGCCGCATCTCAAGAAGACACCGGACTTGTGCACCTTGTGAACCACACCACGAGCGATCTCGCCTTTGAACATTTTGAAGG
TGATCCCACTGAAAACCACCGGGAAGACAATCTCGCCAGTGGTTTCTCTGATTCTCCCCTCGCCTATTTCCTCCAAGCTTTTGAGT
GCTATGAAGTAGCCGAGATCTTTGGTTGCTTTCTTGGAAGCAAAGGCATCTAGTAAACGAGTGAGAACAGCTGTTTGGATTATGTG
GCCGTTGGGGTCCATTGCTTCAGCTGGTATGATGACATTCCATGGCAATTTGACTTTGATGAACATTTTTTTTCCAGTCTGTAACT
TGACTTTGCCGGAAAGACAAGATCAGAAGCTACAATGAAACGATCCGGCGAGAAGACACAGAGTTCTTCGCTTTCGAGAGTATCC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002868270 RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 613 | 2e-061 |
| XP_002883384 RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 613 | 2e-061 |
| NP_566719 DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana] | 609 | 7e-061 |
| NP_193202 DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana] | 603 | 3e-060 |
| XP_002314654 predicted protein [Populus trichocarpa] | 570 | 2e-056 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LIK7 Putative calcium-transporting ATPase 13, plasma membrane-type | 569 | 1e-057 |
| Q9LY77 Putative calcium-transporting ATPase 12, plasma membrane-type | 418 | 4e-040 |
| Q9LF79 Calcium-transporting ATPase 8, plasma membrane-type | 342 | 3e-031 |
| Q9SZR1 Calcium-transporting ATPase 10, plasma membrane-type | 332 | 4e-030 |
| Q9LU41 Calcium-transporting ATPase 9, plasma membrane-type | 284 | 1e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q8LE42 RNA polymerase II fifth largest subunit-like protein | 609 | 5e-061 |
| A6QRA1 At4g14660 | 603 | 2e-060 |
| B9HUM9 Predicted protein | 570 | 2e-056 |
| B9HKE3 Predicted protein | 561 | 2e-055 |
| B9S9D8 DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative | 561 | 2e-055 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT3G22900.1 NRPD7; DNA-directed RNA polymerase | 615 | 5e-064 |
| AT4G14660.1 NRPE7; DNA-directed RNA polymerase | 603 | 1e-062 |
| AT3G22910.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) | 570 | 9e-059 |
| AT3G63380.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) | 418 | 4e-041 |
| AT5G57110.1 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8); calcium-transporting ATPase/ calmodulin binding / protein self-association | 342 | 2e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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