RadishBase

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Information for unigene UN06952

FASTA Sequence

Unigene ID: UN06952	Length: 768	SSR
GGATCTTTGGCGAGCCTCGAAGAAAGCCAAAAAAACAAATCTAAAGAGCTTCTCTTCTTCTTCTCTTCTTCTTCTTCTCTCCTAGG GTTTCGACTCTCGACGGCCGGCAAGGTTTTCAACCTCTCGTGAAAGGGGAAAGATGAGGCCAGTGTTCTGCGGGAACTTTGAGTAT GATGCTCGTGAAGGTGATCTCGAGAGGCTTTTCAGAAGATACGGCAAGGTCGACAGGGTTGATATGAAAGCTGGGTTTGCTTTTGT CTATATGGAAAACGAGAGGGATGCTGAGGATGCTATCCGAGCGCTTGATCGCTATGAGTATGGCCGTAAGGGACGCAGACTCCGTG TTGAGTGGACTAAGAACGAGCGTGGTGCTCCTGTGAAATCAGGTGGTTCAAGGAGATCATCAAGCCTGCGTCCTTCCAAGACTCTG TTTGTGATCAACTTCGATGCAGAGAGCACTAGGACTCGTGACTTGGAGAGGCATTTTGAGCCGTATGGGAAAATCGTTAACGTTAG GATCAGAAGGAACTTTGCTTTTATCCAATACGAGTTGCAAGAAGACGCCACCAGAGCATTGGAAGCTACAAACTCGAGTAAGCTGA TGGACAAGGTGATCTCAGTGGAGTATGCAATGAAGGATGATGATGCGAGAGGAAACGGATACAGTCCCGAGAGGCGTCGTGATAGG TCTCCCGATAGGAGAAGCGATCACCTAGTCCTTACAGAAGAGAAAGAGCAGTCCTGACTACCGTCGAGTGCTAGTCTGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_851174 arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]	887	2e-093
NP_200017 arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]	887	2e-093
XP_002322436 predicted protein [Populus trichocarpa]	785	1e-081
ACU18770 unknown [Glycine max]	784	2e-081
AAS00039 splicing factor-like protein [Vitis riparia]	782	3e-081

Swiss-Prot top hits (Blast detail)	Score	e value
P92966 Arginine/serine-rich-splicing factor RSP41	887	1e-094
P92965 Arginine/serine-rich-splicing factor RSP40	865	4e-092
P92964 Arginine/serine-rich-splicing factor RSP31	627	1e-064
Q10021 Probable splicing factor, arginine/serine-rich 5	155	8e-010
Q9BQ04 RNA-binding protein 4B	129	8e-007

TrEMBL top hits (Blast detail)	Score	e value
Q3E8C5 Putative uncharacterized protein At5g52040.2	887	1e-093
Q9M0K9 Splicing factor At-SRp40 (Fragment)	854	1e-089
B9ID09 Predicted protein (Fragment)	785	1e-081
C6TAB8 Putative uncharacterized protein	784	1e-081
A5AVS4 Putative uncharacterized protein	782	2e-081

Arabidopsis top hits (Blast detail)	Score	e value
AT5G52040.1 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding	887	9e-096
AT5G52040.2 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding	887	9e-096
AT4G25500.1 ATRSP35; RNA binding / nucleic acid binding / nucleotide binding	865	3e-093
AT5G52040.4 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding	714	1e-075
AT5G52040.3 ATRSP41; RNA binding / nucleic acid binding / nucleotide binding	708	5e-075

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			25%


11	2			50%


21	1			25%

Unigene Members	Member information