RadishBase

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Information for unigene UN07062

FASTA Sequence

Unigene ID: UN07062	Length: 757	SSR
TTTTTTTTATTTGAATAATTACCACAGAACAACAGATTACAAGAAGGTAAAAACCTCGGAGAATGAGATAAACTGGTGTCAGAGAG CAAAGGTAAAAGAATCCTTTTAGCATTCACATCCTGCTGACCTCTGTGGATTGCTGGTTCCGACATCGATTGTGTCCGGCAAGTAC ATTTCATCTTCTTCTCCACTCTTCATAGCATTCTTGGTAATACACAAGAATGCGTCTTCAACATTGGTGCCTTCTTTAGCAGAAGT TTCATAGTAGGGGATGTTTCCTTTTGAAGCACACCAAGCTCGAGCCTTCTTCTCTGAAACCACACGGCTGTTTCCACCATCTACAT CGATTTTGTTACCGATGACAACAAAAGGGAAGTTCTCTGGATCAGATGGGCTCGCCTGAATCAGAAACTCTTCCCTCCAGTTATTG AGATCCTCAAGGCTCTGGAACCTTTCCTGACCAGCGGTGTCCCATATCTGTAAAGTGAAAAGGCGGTCTTCATAGTGTACTTCCTT AGTCAAGAAATCGGCACCAATGGTGGCCCTGTACTGGTTGCTAAACTTCTTATTAACATATTGATTCATCAAAGAGGTCTTCCCCA CCCCGCTATCGCCGAGGATGATGACTTTGAGGAGAGTTCTTCTACGGGAAGTCATCGAAACTCGGACTAGAGATGAAATCAACGAT TCACGGATGGATCTCGGCTATCTCTCTCTCTCTCTAAGTAAAGTCGGTGTTTGTTTTCTTCTTCCCTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_175355 RAB GTPase homolog G3E [Arabidopsis thaliana]	570	1e-056
XP_002883153 hypothetical protein ARALYDRAFT_898258 [Arabidopsis lyrata subsp. lyrata]	543	2e-053
ABB02623 unknown [Solanum tuberosum]	527	1e-051
XP_002313053 predicted protein [Populus trichocarpa]	526	2e-051
NP_188512 Ras-related protein Rab-7A [Arabidopsis thaliana]	524	3e-051

Swiss-Prot top hits (Blast detail)	Score	e value
P31022 Ras-related protein Rab7	503	3e-050
O24461 Ras-related protein Rab7	485	4e-048
Q40787 Ras-related protein Rab7	477	3e-047
Q9XER8 Ras-related protein Rab7	477	3e-047
P93267 Ras-related protein Rab7A	456	9e-045

TrEMBL top hits (Blast detail)	Score	e value
Q9XI98 At1g49300	570	8e-057
Q38JI9 Putative uncharacterized protein	527	8e-052
A9PE06 Predicted protein	526	1e-051
Q9LS94 AtRab71	524	2e-051
A5BFL3 Putative uncharacterized protein	523	2e-051

Arabidopsis top hits (Blast detail)	Score	e value
AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	571	4e-059
AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	571	4e-059
AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding	525	9e-054
AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding	476	4e-048
AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding	473	9e-048

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

Unigene Members	Member information