 |
Information for unigene UN07074
| FASTA Sequence |
| Unigene ID: UN07074 | Length: 1615 |
SSR | | GCTGGAGAAAGATGCTCTTGTTAGACAGATGGGTGTGAACCCAACAAGTCAGAACCCTACACTGTTCAAAGATCTCCTCGGCTAAC
AGAACCATTCTCCCAACCAAACCAAAACATCCATTGACTCACATAATCATCTTCATCATCATCAACATCGCCACACATTCCCATAT
TTGGTAATGCGTTGTGGAGTTTGTTGGTAATGCTTCTGATTTCACATTCTCAAGTCTCAACATCGCCACATTCACGTATATTTTTG
ATAGGGTGCGTTGGGGGATAAGTAATGTTTCTGGTTTAAGAACAGCTTTTTGTTGTACCTATGTTCCTGGAGATTTTTGTTTTCAA
AGGTTTCTCTTTTTTTTTGTTTTCATATCAGTGAATGGTTGCTGTTTGATTTTGGAGCTTCTCTTGTTTGTATCTATAGAAACAAT
GTTACTATTATAGGCGTGATGGATACAAAGTTATTACAAGCTAAGCTTTGGTAAAAATGCTATTCGTAAGCATTCACATACCAACT
TCAAAACCACAAAAATCAATTGAAAAACAACAAAGAAGGGGATTCCAACTTTATTGAAGTAAATATGGCTGTTCGAATGTATTTTG
TATTACTGTAGATGAAATTTGTTTTTCTAAATCACTTGTGTAAAACATCTAATATCAAGTATTAAATCATCTAAGAAACTATCGGT
AGTGACACTCCTTTATCGTCATCATCTGCACTGCTACACAGCCTCACTCAACAGAAGTGAGAAACGATTGGATGCCAAAAATAATG
AAAAGCATTCCACCAGAAAGAGCAACTATTCGTTCGGATATTTGGGAAGCTAAGCTCTTTCCTCCAATCACAGCAGCAGTTGTACA
CAATAGCCGTGCGACAATTCCGCCAAGGACCACCCCAAACGGATTTTCATCGGCAGCTAAACCAATAGTAGCAAGCTGACTCTTGT
CACCAAATTCACCAAAGAAATTAATCGAAAATGCCTTGAGAAAGATTGGAGAAAAGAATTGTGTGAGGAACGGCCTTTTCTCCTTT
TTGTTTTCATCTTCAATCTTACTGTTGTTATCTTTGGTAGCTTTACCATTAGCCTTCAAATCAGAATCCAGTTCTGCTTCGACTTC
AGCCAATTCTTCTGATTCCCCTCCATCTCCTTTGAAACCGTCAAGCAAAGACCAAAGACCGAAACCAAAGAACAACAATGTCGTTA
TGTGATGAGTCCACTTGCGAGAGATCAGATTAGGAGCAGCCCATCCAACAGTAGCAGAGAGGATAGTCATGACAATAAGAGCAGAG
ACACAACCAGCCAACACAAGTCTCCTTGGATAACGCATCGCCAGAATAGCGGCGGCGAAAAAGGTCTTGTCGCCAATCTCCGAGAC
AAAAGTCATGGCCAGTGACTTGGTAAAACCCTGCAAAACCGAGCTCATGGCTATCGTCTTATATATAAGCAGCTTCAAACTCCGAA
AACTTCCGAACTTAACCAGAGTCAAGCGGAGTGATCGACTGCCAGAAGAAGCAAAGAGCCGGCAGTCTAGAGAGAGAGAGACGAAA
GTTGTGTTCAAGTGCGCAGCGAAAGATGAATGATTTTTTATTTTTTCTTTCTTTGTTAGAGGCTTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173923 putative transmembrane protein [Arabidopsis thaliana] | 1043 | 6e-111 |
| XP_002893419 hypothetical protein ARALYDRAFT_335795 [Arabidopsis lyrata subsp. lyrata] | 1043 | 6e-111 |
| AAM65603 transmembrane protein, putative [Arabidopsis thaliana] | 1040 | 1e-110 |
| XP_002887196 hypothetical protein ARALYDRAFT_475991 [Arabidopsis lyrata subsp. lyrata] | 998 | 9e-106 |
| NP_177032 UPF0016 protein 5 [Arabidopsis thaliana] | 989 | 1e-104 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9HC07 Transmembrane protein 165 | 418 | 7e-040 |
| Q4V899 Transmembrane protein 165 | 416 | 1e-039 |
| P52875 Transmembrane protein 165 | 415 | 2e-039 |
| P38301 UPF0016 membrane protein YBR187W | 372 | 1e-034 |
| Q9P7Q0 UPF0016 membrane protein C186.05c | 171 | 3e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C6M1 Putative transmembrane protein | 1043 | 4e-111 |
| Q8LA33 Transmembrane protein, putative | 1040 | 8e-111 |
| Q9SX28 At1g68650 | 989 | 7e-105 |
| B9ST29 Transmembrane protein TPARL, putative | 933 | 2e-098 |
| B9N257 Predicted membrane protein | 909 | 1e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
