Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN07083

FASTA Sequence
Unigene ID: UN07083Length: 1706 SSR 
AGAGAAGGAAAAGGCTCAAGGGGAGAGCCATGTCGCATACGGTGTTTCAGAGCGCCGTCGTCGTCGCTCCAAAACCCTCTTTACCA
ATCCCTCGCTCAATCTCATTTCTACCTTGTAAGCCCCGCCGCGTCAGCTTCGTCAGAGCTTCATCATCATCCTCCTCTTCCCTCAT
CGATTCCGTTGGAGATTCAGTCTCAGGTCTCGAACGCTGCTTACAGCTTCCCTTTAGCGGTGACTCAGCCCCATCATCATCTTACT
CTACTATCTCAGCTTCTTCTCCAAGTGCTCAGATGTGTCCAGTGATGAAAGGTGGCAAGTTCGGGTCCGTAGGAGCTGTTACCTTG
GAAAAAGGGAAACTTGATATGACCCAGAAGAAAGTCGAGTCTACCCCTGAGATTGCAACAGGAGGAGGAGGTGGAGACATTGGGAA
GAAAATCAATTTCGGTGGTGGGGATGGAGGTGATGACGATGGTGACGATGATGATTACTTTGACGAGTTTGATGATGATGATGACG
GAGATGAAGGTGGACTTTTTAGACGGAGGATGTTCCTCGCTGAGATATTTGATAGGAAGTTTGTTGATGCTGTGTTGAACGAGTGG
CAAAAGACAATGTTGGATTTGCCTGCTGGTCTCCGTCAAGCATATGAAATGGGTTTGGTGAGCTCAGCACAAATGGTTAAGTTCCT
TGCCATTAATGCTCGTCCTACAACAACTAGATTGATCTCCCGTGCTCTTCCTCAGGGGTTGTCTAGGGCCTTCGTTGGCAGGATGT
TAGCGGATCCTTCATTTCTCTACAGACTTGTTTTAGAGCAAGCTGCCACGGTTGGATGCTCGGTTTGGTGGGAGGTCAAGACCCGT
AAGGATAGAATAAAAGAGGAATGGGATCTTGCACTTATAAACGTTCTTACCGTATCAGCATGCAACGCAGCCGCCGTCTGGTTGTT
AGCTCCGAGCCGTTCGTACGGAAACACGTTCCGTTTCGACCTGCAGAACACACTGCAGAAGCTACCGAACAACGTATTCGAAACGA
GCTATCCTCTCAGAGAGTTCGACTTGCAAAAGAGAGTCCACTCTCTTTTCTACAAGGCCGCAGAGTTGTCTATCCTTGGAGTCGCC
ACAGGTGCCTTCCAGGGTTCCTTGTCTAACTTTCTTGCCGGGAAAAAGAAGAATAGAGTATCTGTGACAGTCCCGTCAGTCACCAC
AAACGCTCTTGGTTACGGCGCTTTTCTTGGATTGTACGCTAACTTGAGGTATCAGCTGTTATGTGGGTTTGAGAGAACAATGAGCA
GTCACTTTGATGTTATAGGAGTAGCACTCTTCTTTGGGACTGCAGTGAGGATTATGAATGTTCAGTTAGGTGAAAGATCGAGACAG
ATATGGTTAGGTGTGGAGGCAGACCCTCTGGCTCAGTCAGGTGGTTTGCTGGCAAAAGCATACAACCGACCCTCCTCCTCAGAGGA
AGCAGGAGTAGCGAAGAAGCCGTCTTCGAGATGGTTCATCTCAAAGAATGCAATAGTCTCAGGGCTGCTCGGTATGAAGAAGCAAG
AACAAGACTCATGTTCGGATTCTCCTCCACCTCCAAAGGCTAGGCGGAAGAGGATTGTAAGGAAGAAGGTGGCTGCTGCTGCTGCA
TCTGCTTCATAAAATAGCCAAAAGAAACCTTTACTGATGTCACTGGAATGAGCAGCAGTGAAAAGTTTTGTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874216 hypothetical protein ARALYDRAFT_910514 [Arabidopsis lyrata subsp. lyrata]21271e-236
NP_197857 uncharacterized protein [Arabidopsis thaliana]21135e-235
BAF01744 hypothetical protein [Arabidopsis thaliana]21091e-234
BAF02139 hypothetical protein [Arabidopsis thaliana]21091e-234
BAF01720 hypothetical protein [Arabidopsis thaliana]21072e-234

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q93W02 AT5g24690/MXC17_821133e-235
Q0WL68 Putative uncharacterized protein At5g2469021091e-234
Q0WMB2 Putative uncharacterized protein At5g2469021091e-234
Q0WMD6 Putative uncharacterized protein At5g2469021072e-234
Q0WLD5 Putative uncharacterized protein At5g2469021062e-234

Arabidopsis top hits (Blast detail)Scoree value
AT5G24690.1 INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink).21364e-240
AT5G22790.1 RER1 (RETICULATA-RELATED 1)2833e-025
AT2G40400.1 unknown protein1865e-014
AT2G40400.2 unknown protein1865e-014
AT3G56140.1 unknown protein1831e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
213  50%
 
191  17%
 
201  17%
 
91  17%

Unigene MembersMember information