RadishBase

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Information for unigene UN07104

FASTA Sequence

Unigene ID: UN07104	Length: 859	SSR
GGACTAGTCCACCTCTAAATCACAAATTGCGCAACTAAACCCACAAGTCTAGAGAGAGAGAGAGAGAGTGAGAGTGTCAATAGAGA GAGAGAAAAATGGCGAGATTGACGGTGCTGATTGCTGCGGTGGTACTGGCTTATGTAGTGGTGATGCCACTGCCGGGAGTGACCGC GAAGAAGTATACCGTCGGTGACAACAAGTTCTGGAACCCAAACATCAACTACACCATCTGGGCTCAGGGAAAGCATTTCTACCTCG GTGACTGGCTCTATTTCGTGTTCGACAGAAACCAACACAACATTCTCGAAGTAAACAAAACCGACTATGAAAACTGCAATTCCGAC CATCCTCTCGTAAACTGGACACGTGGAGCAGGGAGAGACGTTGTCCCTCTCAACGTGACAAAGCATTACTATCTGCTCGACGGAAA GGGTGGATGTTACGGAGGCATGAAGCTCGCAGTTAAAGTAGAGAAGCTCCCTCCTCCACCAAAATCGGCACCTGTCAAGAACATTG GATCAGTCTCCGTGGTCACAGGTCTCGCTCAGTTCATGATTCCGTTTGCCCTGTTAAGGATGTGGTAAGTGACCAATCTCACATTT TTTGGATCACATCCAATTTGAAAAAAAAAACCTAAAATTCTTTTTCAGGGAAAGCCTTTAAGTTAGAAATGTCCAATCAAGTCAGT TTACTTTATTTTTGTAATGTTTGGTTTTGTTATGTTTGTGTGTTTGAATCAATTGTCTAAAAGGGCTGTGTACTTGTTTTATTTTG CTGAAATTAATTGTTGAACAAAGAGAGAGAGAATGTATTATCTGGATCATGTATTATCTGGATCATGTGTGAATGAAAATCATAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197039 Lamin-like protein [Arabidopsis thaliana]	768	2e-079
AAN60271 unknown [Arabidopsis thaliana]	760	1e-078
XP_002873721 hypothetical protein ARALYDRAFT_909508 [Arabidopsis lyrata subsp. lyrata]	755	5e-078
ABL97976 lamin [Brassica rapa]	749	3e-077
CAA65749 lamin [Brassica oleracea]	625	6e-063

Swiss-Prot top hits (Blast detail)	Score	e value
Q39131 Lamin-like protein	768	7e-081
Q41001 Blue copper protein	180	1e-012
Q8LG89 Basic blue protein	159	3e-010
Q9T076 Early nodulin-like protein 2	145	1e-008

TrEMBL top hits (Blast detail)	Score	e value
A1YMX0 Lamin	749	2e-077
Q39370 Lamin	625	4e-063
C6SVN5 Putative uncharacterized protein	558	3e-055
Q8L9G8 Putative lamin	538	5e-053
Q9MAC1 At3g01070	538	5e-053

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15350.1 plastocyanin-like domain-containing protein	768	7e-082
AT3G01070.1 plastocyanin-like domain-containing protein	542	1e-055
AT4G12880.1 plastocyanin-like domain-containing protein	536	5e-055
AT2G27035.1 plastocyanin-like domain-containing protein	282	2e-025
AT3G60270.1 uclacyanin, putative	179	1e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			33%


7	2			67%

Unigene Members	Member information