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Information for unigene UN07111
| FASTA Sequence |
| Unigene ID: UN07111 | Length: 1074 |
SSR | | GGGCGGAAGGAGTGAGTTGGGAAATCAATAATTCATTTCATTTTTAGGGTTTTAGCTTTTGTCTCTCCTCTGAAACGAAGAATGGC
TATGTATCTTCTCTACGAGTCATCTTCTGGCTATGGCCTCTTCGAGGCGCACGGTCTTGATGAGATCGGACAGAACACAGAGGCCG
TACGGAGCTCAGTCTCGGACCTCAGTCGCTTTGGTCGTGTTGTCCAGCTGACCGCTTTTCATCCCTTCGAGTCTGCCCTCGATGCC
CTCTATTGGAGATATGGTCGGTGCCCGTCTCATTTCACATGCTGGAAGTCTGACTAACCTTGCCAAGTGCCCATCTTCTACCCTCC
AGATTCTCGGAGCTGAGAAGGCGCTTTTCAGGGCTCTTAAAACACGTGGAAACACACCCAAGTATGGGTTGATCTTCCATTCTTCC
TTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATCGCTCGTTATCTTGCAAACAAGTGCTCTATAGCTTCCCGTATTGATTG
TTTCGCTGATGGAGCAACAACGGCATTTGGTGAGAAGCTTCGTGAACAAGTAGAGGAAAGGCTAGACTTTTACGACAAAGGTGTTG
CTCCACGCAAGAACGTAGATGTAATGAAGGAGGTGTTAGAGAATCTGCAAAACAAAGATGAGGAAGGGAAGGAGGCAGTGGATGAG
GAGAAGTCAGAGAAAAAGAAGAAGAAGGAGAAGAGGAAGATGGAGACAGAAGAGGAGGATGAGAAATCAGAGAAGAAGAAGAAGAA
AAAGACGAGCAAGTCTGGAGGAGAGGAAGAGACTGATTATGGTGGTCAGAGCAAGAAGAAATCCAAGAAGAAGAAGAAGTCAAAGA
GTGAGGATGACGACGAATAGGGAGGGGATGATCCACAACATAATGGACCCTGTATTCTGTTTCTTTTTTGCTGTGTTTCTTTTTCT
TAGTAAACTCTTCTGCTAGAGTATCTGTGTTCTACTTTGAAAACTAGTATTTGATAACATCTCAAGTTTTGCCCATCATTTTAGTA
TTATTTTTGTCCAACTTGCTTTTAAGTATTTTTTACTTTATT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894559 hypothetical protein ARALYDRAFT_474678 [Arabidopsis lyrata subsp. lyrata] | 789 | 9e-082 |
| NP_176007 homolog of nucleolar protein NOP56 [Arabidopsis thaliana] | 768 | 2e-079 |
| XP_002882791 hypothetical protein ARALYDRAFT_478647 [Arabidopsis lyrata subsp. lyrata] | 766 | 4e-079 |
| NP_187892 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana] | 765 | 5e-079 |
| XP_002322238 predicted protein [Populus trichocarpa] | 746 | 9e-077 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9D6Z1 Nucleolar protein 56 | 613 | 1e-062 |
| Q5RA29 Nucleolar protein 56 | 603 | 1e-061 |
| Q95K50 Nucleolar protein 56 | 599 | 4e-061 |
| O94514 Nucleolar protein 56 | 584 | 2e-059 |
| Q3SZ63 Nucleolar protein 56 | 559 | 2e-056 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SGT7 At1g56110/T6H22_9 | 768 | 2e-079 |
| Q9LTV0 Nucleolar protein | 765 | 4e-079 |
| B9IF81 Predicted protein (Fragment) | 746 | 6e-077 |
| Q0WVV7 Putative nucleolar protein (Fragment) | 700 | 1e-071 |
| B9RAI8 Nucleolar protein nop56, putative | 687 | 4e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G12860.1 nucleolar protein Nop56, putative | 777 | 8e-083 |
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 768 | 9e-082 |
| AT3G05060.1 SAR DNA-binding protein, putative | 364 | 7e-035 |
| AT5G27120.1 SAR DNA-binding protein, putative | 359 | 2e-034 |
| AT5G27140.1 SAR DNA-binding protein, putative | 343 | 2e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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