Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN07166

FASTA Sequence
Unigene ID: UN07166Length: 1179 SSR 
GGACACAAAACAAGAAAGAAGAAGTAAAAAGCTCACCGCTTTAACCTTTCTAGAGTGAAAGAACTCTGAAAAAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGATGGAAGGCAAAGAAGAAGATGTGAGAGTTGGAGCTAACAAGTTCCCGGAGAGGCAGCCCATCGGA
ACATCAGCTCAGTCCGACAAGGACTACAAAGAGCCACCCCCTGCGCCACTGTTCGAGTCCGGAGAGCTGAGCTCGTGGTCTTTCTG
GAGAGCAGGAATCGCCGAGTTCATAGCTACTTTCCTCTTCCTTTACATCACAGTGTTGACAGTGATGGGAGTGAAGAGAGCACCAA
ACATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTCGTCTACTGTACTGCTGGAATT
TCAGGTGGACACATCAACCCTGCGGTTACGTTCGGTTTATTCTTGGCTAGGAAGTCGTCTCTGACCAGAGCTGTTTTCTACATGAT
TATGCAATGTCTCGGAGCCATCTGTGGTGCCGGAGTCGTCAAGGGTTTCCAGCCAACGCCGTACCAGACTCTCGGTGGCGGTGCCA
ACACCGTCGCTCCCGGCTACTCCAAGGGATCTGGTCTCGGTGCTGAGATCATCGGAACCTTCGTCCTCGTCTACACGGTCTTCTCC
GCCACCGACGCCAAGAGAAGCGCCCGTGACCCACACGTCCCGATTTTGGCACCACTCCCAATCGGGTTTGCAGTGTTTTTGGTACA
CTTGGCGACAATTCCGATAACCGGAACCGGAATCAATCCAGCTAGAAGTCTTGGAGCTGCCATTATCTACAACAAGGGAAACTCCT
GGGACGACCATTGGATTTTCTGGGTTGGACCGTTCATTGGAGCAGCTCTAGCAGCACTCTATCACCAGATTGTCATCAGAGCTATT
CCTTTCAAGAGCAAGAGCTGAACCATATGATGAACTAGAGATCCAATCTTTTATTTACTGTTATGTAATTTCTTTGCTTATCTAGC
TTTTGTTTTGCAATGATGTACTATATTTGGGATTTTGTGAATTTCTTATGAGCTTGTTTTGTTTAAGCATTAACTAGTTTGCTCTA
TGCTGTTTCCTCCCTTCTTTTCTTTGTATGCATTTTATAATAATAAATCTTGTTTTCACTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34288 unnamed protein product [Thellungiella halophila]14654e-160
ABO71659 trans-membrane water channel protein [Brassica juncea]14645e-160
XP_002889360 hypothetical protein ARALYDRAFT_470115 [Arabidopsis lyrata subsp. lyrata]14261e-155
NP_171668 aquaporin PIP1-3 [Arabidopsis thaliana]14252e-155
CAA64896 transmembrane channel protein [Brassica oleracea]14224e-155

Swiss-Prot top hits (Blast detail)Scoree value
Q39196 Probable aquaporin PIP1-414382e-158
Q08733 Aquaporin PIP1-314258e-157
Q06611 Aquaporin PIP1-214096e-155
P61837 Aquaporin PIP1-114071e-154
P61838 Aquaporin PIP1.114071e-154

TrEMBL top hits (Blast detail)Scoree value
A4URF3 Trans-membrane water channel protein14644e-160
A9X4U3 Aquaporin PIP114223e-155
Q39384 Transmembrane channel protein14223e-155
Q7GCI6 Plasma membrane aquaporin 1c14223e-155
Q9MBA0 Plasma membrane aquaporin 1b14196e-155

Arabidopsis top hits (Blast detail)Scoree value
AT4G00430.1 PIP1;4 (PLASMA MEMBRANE INTRINSIC PROTEIN 1;4); water channel14392e-159
AT1G01620.1 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel14265e-158
AT2G45960.1 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel14104e-156
AT3G61430.1 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel14086e-156
AT3G61430.2 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel14086e-156

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
151  33%

Unigene MembersMember information