 |
Information for unigene UN07238
| FASTA Sequence |
| Unigene ID: UN07238 | Length: 1106 |
| SNP | GCGACGACAAAAACGCATACGCAACATCATTGTCATGTATGTCCTAACATCATCCAAGGATCAAACATAAAGCAAAAGCATCAAGA
GAAGCGTATTAAAACTTGTGTAAACGAAGAAATGAAGCAAGAGGTTTCAACCTAGTTTGCAAACAAATATCTGATAAAGCCATAGC
TAACAAACAAGACTGCTGCATAACAGATGAGAAGAGAGAGAATCACTGGCTTGGAGAACGGTCTCCATTTCGTTCCCCACGAGGAC
TTGGGCTCCTGCTCTGCCTGGGGACAGGGCTCCTGGCTTGTTCAGGAGTGTAGCTCCTGTTTCTTCTGGGGCTCACGCTTCTTCTT
GGGCTCCGGCTCCTGCTGTAGCTTTTCTTCACCTTCTCACGACTTCCACTGCGAGCCCTTGAGCCATTACGTGGTGGTGAACGAGA
GTATGACCTCTCCTTCTCGTATCGTCTCTCCTGTGGTGAGACAGACCTAGATTGATGTCTTTTAGGGGGAGGAGAGTTATAGTCAC
GGCTACGTGATCGTGTTCTACCACCACGTCGAGGGGGTGGAGAACGAGAGTAGCGAGGAGGAGAGCGTCTTCTGTCATTGAATCTG
TTGCTCCTGCCACCTCGATCCCTTGTTCTCATCTCAGTTGGCTTCTTCCTATTCTCTTCTGCAAATACGACAGTCAGCTCACGACC
AAGAAGAAGATAGCCTTCCATGTGATGTTTTGCCTCAGCAGCATCAGCAGGATCCACATATTGGATGAAACCAAATCCCCTTGGAT
CTCCGGTATAATAATCCCTTGGAAGGTAGATGTCTTTGACAGGACCAAACTGCTCAAATGGCCTCCTAAGGTCTTCTTGCCTGCAA
TCATGACGAAGGTTGCGAACCAAAAGACTGGTAGGTAGATCCCTGTCACGACCCCCACCACCGTAACGGCTACCACCACGGGGGCT
AGGGCTCCTGCCCCTCCTACCATAACCCCTCGGTGGTGACGGTGTGTAGCTCCTTCCCCTCATTGAGTCTAGTCTTCAATCTCGAA
GATTGAGAAAGTGTTGGACGAAACGACGAACGGCGAAGGAGAAAACAGAGAGGAAGCGGCGCGGAAGGAAGTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002884973 hypothetical protein ARALYDRAFT_478747 [Arabidopsis lyrata subsp. lyrata] | 1188 | 5e-128 |
| NP_187966 SC35-like splicing factor 30A [Arabidopsis thaliana] | 1184 | 1e-127 |
| CAC03604 SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana] | 1157 | 2e-124 |
| NP_564685 SC35-like splicing factor 33 [Arabidopsis thaliana] | 947 | 4e-100 |
| AAK93651 unknown protein [Arabidopsis thaliana] | 945 | 8e-100 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O75494 Splicing factor, arginine/serine-rich 13A | 353 | 1e-032 |
| Q9R0U0 Splicing factor, arginine/serine-rich 13A | 353 | 1e-032 |
| Q09511 Probable splicing factor, arginine/serine-rich 4 | 306 | 4e-027 |
| Q8WXF0 Splicing factor, arginine/serine-rich 13B | 305 | 5e-027 |
| Q3MHR5 Splicing factor, arginine/serine-rich 2 | 284 | 1e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LHP2 Putative serine/arginine-rich protein | 1184 | 1e-127 |
| Q9FYA8 SC35-like splicing factor SCL30a, 30a kD | 1157 | 1e-124 |
| Q9SEU4 At1g55310 | 947 | 3e-100 |
| Q949P4 Putative uncharacterized protein At1g55310 | 945 | 5e-100 |
| Q9C8A1 Putative uncharacterized protein F7A10.15 | 860 | 4e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13570.1 SCL30a; RNA binding / nucleic acid binding / nucleotide binding | 1201 | 6e-132 |
| AT1G55310.1 SR33; RNA binding / protein binding | 968 | 6e-105 |
| AT1G55310.2 SR33; RNA binding / protein binding | 884 | 3e-095 |
| AT3G55460.1 SCL30; RNA binding / nucleic acid binding / nucleotide binding | 441 | 8e-044 |
| AT5G18810.1 SCL28; RNA binding / nucleic acid binding / nucleotide binding | 387 | 1e-037 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
