RadishBase

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Information for unigene UN07246

FASTA Sequence

Unigene ID: UN07246	Length: 1167	SSR
TTTTTCGTCTCTAGGGTTTCTCTCTCCTCTCTCTCTCTCTTTCAGTATATACTCTCTCTCTCTCTCCTTCTCCCACCGAATCCAAA ATACAGAGTTTCCCTGAAAGAGAGGGAAAACTAAAAAAGCCGATCTTTTTTGGTTTCTTTCTCGTGCATCTCCAATACATTCTCAC CACCGGAACTCGATTCGAGGTCACCGCGGGAGGATATGGAGGGACGCGCTGCGGAAGATGTGTTTAAGGACTTCAGGGCTCGAAGA GCTGGTCTCATCAAGGCTCTCACTACTGATGTACGCAGGTTTTACGACAAGTGTAACCCTGCCGAGGAAAACTTGTGTCTCTACGG ACTACCAAATGGGTCATGGGAGGTTAACCTTCCTGTCGACGAGGTCCCTCCTGAGCTTCCTGAACCAGCTCTTGGCATCAATTTCT CAAGGGACGGTATGTCAGAACAAAACTGGGTCTCTTTGGTTGCTGTTCACTCTGACTCTTGGCTCATCGCTGTTGCCTTTTACTTC GGTGCACGTTTCTCATTTGATAAAAACGAGAGGATGAGGCTGTTCAAGATGATAAATGATCTCCCAACCATTTACGAGGTTGTAAC TGGCAATGCAAAGCCATCCAAGGATCAATCTGCTAACCACAACGGCAGTAGCAAAAGCAAGTCTAGTGGTGTCAAGGCTCGCCAAT CTGAATCTCAGACTAAGGCTTCAAAGAGATCCCCACCACCATCACCACCAAGAGAAGAAAGTGAGAGCGGAGATGATGATGAGGGG GAAGAGGAGGAGGGGCAAGGGGAGTTTTGTGGTGTGTGTGTGGAGAGAACGATGATGGAGGAGATGAGTTCTGGATATGGTGTGAT ACTTGTGAGAAATGGTTCCATGGGAAATGCGTGAAGATCACACCTGCAAGGGCGGAGCACATCAAACATTACAAATGCCCCAGTTG CTGCAATACCAACAAGAAACAAAGAGCTTGAAAAAGGAAGGAGATGATGATGATATAACAGTTGCATTTGATTGTGTAGTCTGAAT GTGATTGAAAAAACAGCTTTTACAGTTTAGTAATGTCTCCTTTTTTTCTTTTTCTTGTTGATTTCAAAATGCTGTGACTAATTTCG TCTTGTGGTTCTTAGAAAATTCTTGTCTTTAAAGACTCTATAGCCTGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172903 protein alfin-like 7 [Arabidopsis thaliana]	778	2e-080
XP_002892811 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]	765	6e-079
AEF79998 PHD finger family protein [Corylus heterophylla]	737	1e-075
AAM65374 putative PHD-type zinc finger protein [Arabidopsis thaliana]	736	1e-075
XP_002303216 predicted protein [Populus trichocarpa]	734	2e-075

Swiss-Prot top hits (Blast detail)	Score	e value
O81488 PHD finger protein At5g26210	639	1e-065
Q9W0T1 Nucleosome-remodeling factor subunit NURF301	138	1e-007
O74508 Set1 complex component spp1	130	1e-006
Q5RHD1 Lysine-specific demethylase 7A	124	6e-006

TrEMBL top hits (Blast detail)	Score	e value
Q8LA16 At1g14510	778	1e-080
Q8LAH0 Putative PHD-type zinc finger protein	736	1e-075
B9GVE0 Predicted protein	734	2e-075
Q8S8M9 Putative PHD-type zinc finger protein	732	3e-075
Q06A75 PHD5	730	5e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding	778	7e-083
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding	732	2e-077
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding	639	9e-067
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding	620	2e-064
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding	604	1e-062

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			67%


18	1			33%

Unigene Members	Member information