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Information for unigene UN07254
| FASTA Sequence |
| Unigene ID: UN07254 | Length: 949 |
| SNP | GGAGTCTATCTCTACTGCAATTCTTAGGGTTTTATCCTCCAAACCAGCAAATCCTCTTTCTCTTTTCCGCAAGAAATGGCGGCGAC
ACAACTCACAGCATCACCAGTGACTGTGTCAGCCAGGAGCTTAGCCACACTGGATGGTCTCAGAGCTTCGAGTGTCATCAAGTTTG
GAACTTTGAAACCAGGCACCCTTAAGCAGAGCCAGTTCCGTTCTTTGGTTGTCAGAGCTGCTTCCGTCGTTGCTCCTAAGTATACT
TCAATCAAGCCACTGGGAGATAGAGTTTTGGTGAAGATCAAGGAGGCAGAGGAAAAGACTATGGGAGGTATCTTACTTCCATCCAC
TGCTCAATCAAAACCTCAAGGAGGTGAAGTCGTTGCTGTTGGTGAAGGAAGAACTATTGGGAAGACCAAAGTTGATATCACTATCC
CTACTGGAGCACAAATCATTTACTCCAAGTACGCTGGAACTGAGGTGGAGTTCAACGATGTGAAGCATCTCATTCTCAAGGAAGAT
GACATTGTTGGTCTTCTTGAGACAGAGGATATCAAAGATCTCAAGCCCTTGAATGACCGTGTCTTCATTAAGGTTGCTGAAGCAGA
GGAGAAGACAGCTGGAGGGTTGTTGCTAACCGAGACTACCAAAGAGAAGCCTTCTATTGGCACCGTGATAGCAGTTGGACCAGGTA
CTCTAGATGAGGAAGGTAAGGTTCAGCCACTATCGATATCGACCGGAAGCACAGTTCTCTACTCCAAGTATGCTGGAAACGACTTC
AAGGGCAAGGATGGTTCAAACTACATTGCCCTGAGAGCTTCAGATGTGATGGCTATCCTTTCTTAGTTTATTATATCTTTCTTTGT
AAACCTCTGCAAAATTTGTATCCCAATTGTGGAAATTTTTCATAGACGGCAAAGATCATAATCTGAAATAAAAGACTTTTGAGTTT
GAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197572 chaperonin 20 [Arabidopsis thaliana] | 1167 | 1e-125 |
| AAC14026 chaperonin 10 [Arabidopsis thaliana] | 1140 | 1e-122 |
| AAM77651 cp10-like protein [Gossypium hirsutum] | 1027 | 2e-109 |
| XP_002516232 groes chaperonin, putative [Ricinus communis] | 1004 | 9e-107 |
| ABK96728 unknown [Populus trichocarpa x Populus deltoides] | 970 | 7e-103 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O65282 20 kDa chaperonin, chloroplastic | 1167 | 5e-127 |
| Q02073 20 kDa chaperonin, chloroplastic | 778 | 6e-082 |
| P0A347 10 kDa chaperonin | 270 | 5e-023 |
| P0A348 10 kDa chaperonin | 270 | 5e-023 |
| B0KBR4 10 kDa chaperonin | 265 | 2e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LK52 Cp10-like protein | 1027 | 1e-109 |
| B9RR63 Groes chaperonin, putative | 1004 | 6e-107 |
| A9PK25 Putative uncharacterized protein | 970 | 5e-103 |
| A9PIF1 Predicted protein | 967 | 1e-102 |
| Q6B4V4 Chloroplast chaperonin 21 | 949 | 1e-100 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G20720.1 CPN20 (CHAPERONIN 20); calmodulin binding | 1173 | 9e-129 |
| AT5G20720.2 CPN20 (CHAPERONIN 20); calmodulin binding | 1173 | 9e-129 |
| AT1G14980.1 CPN10 (CHAPERONIN 10); chaperone binding | 142 | 3e-009 |
| AT1G23100.1 10 kDa chaperonin, putative | 131 | 6e-008 |
| AT2G44650.1 CHL-CPN10 (CHLOROPLAST CHAPERONIN 10); chaperone binding | 113 | 7e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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