Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN07308

FASTA Sequence
Unigene ID: UN07308Length: 1097 SSR 
ATCAAATCTGATCTCTTAGCTTGGAAAGAGAAAACAACAAACAAGAAGCATAAATAAACAAAAGCCAATGTCAGGAAACAATTTTT
GGGTTTATTAGTAAGCAAATAACAGAAAAAAAGAGAAATATAACAAGAATATGATTGTCTGATGCAAAGAGACTCAGAGAGACCAG
TTGTGATGGTGTGAAGAAGAGTCATAAGCCCTTGAGTTCTCACCTTCCATGTACTGCCTCCTATTCTGATGTTGATGGTCAGATAA
CTCGAACTCACCCATTGTCGTTCCACCGCCCATCTCTGTCTCGGTGAATCGCCCCAAATTCAAAACAGGAGACATATCATTCTGAC
AGTTATTGTCATCGTCCTTAAACACCCAAGGCGGGTTCAGATACTGATGCTGGCTAGGTGCAGGTGGTGGCTGAGCCATTGTAACC
GTCATCGGACCAAAACCTGAAGAAGTTCTCCATGTGTTGTTGTCGTTGTTGTTGTTGTCATGTAGCTGATGTGGGTTTGACAGAAG
AGAGAGAGCACAGTTTGAGTCGCTGCCAATTCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTGGAGATGCGAAGCTTATCC
CTCCTCCTCCTCCTCCACTGACTGATCCTTGACTAAACACGTTCATCGGATTAATCTGCCACGACGGTCGTCTCATCACTCTTGTA
TCCAACGTTCTTGTATTTGTCCAACCCATTTCTTGGGAACCAAGAAAGCTCCCATTCATTGTAGTTTCAGCATTTCCGTAAAGCGA
AGGTGCTATCCTCCCGTAACGAGAAGACAACACAGAGAGAGACGCAGGCTGCGGCTTCCGTCTTCTCTCATTATGACCAGCGAGTC
TCCTACGGCAACTCCTTTTCTCTAGGTCAAATTCCGGAAGCTGATGAAACCTGCTGCACTGTTGACAGAACCTTTGTTCGATACCA
GCGACAATGGCTTTGGGTGTTTTAGAGTGCACTCCACACACTCTGTGCCTAGAGTAATAACCCTTTGCATTGGTTAGATCCATTCC
ACAACCTTCCAGCGTACCCTTCTGTTGGAACCCATATTCATTTTTGTTTCCTCTTACTCAGACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34624 unnamed protein product [Thellungiella halophila]13661e-148
NP_181749 squamosa promoter-binding-like protein 9 [Arabidopsis thaliana]13113e-142
CAG25585 putative squamosa-promoter binding protein [Arabidopsis thaliana]13086e-142
AAK76681 putative squamosa-promoter binding protein [Arabidopsis thaliana]13051e-141
XP_002879972 hypothetical protein ARALYDRAFT_903568 [Arabidopsis lyrata subsp. lyrata]12299e-133

Swiss-Prot top hits (Blast detail)Scoree value
Q700W2 Squamosa promoter-binding-like protein 913111e-143
Q9M2Q6 Squamosa promoter-binding-like protein 154401e-042
A3C057 Squamosa promoter-binding-like protein 173575e-033
Q7EXZ2 Squamosa promoter-binding-like protein 143451e-031
A2X0Q6 Squamosa promoter-binding-like protein 33234e-029

TrEMBL top hits (Blast detail)Scoree value
D6QZ29 Promoter-binding protein SPL95469e-054
Q9SNV3 Squamosa promoter binding protein-homologue 5 (Fragment)4761e-045
A2Q4T4 SBP4421e-041
Q9SNV4 Squamosa promoter binding protein-homologue 4 (Fragment)4303e-040
B9T274 LIGULELESS1 protein, putative3882e-035

Arabidopsis top hits (Blast detail)Scoree value
AT2G42200.1 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9); transcription factor13128e-145
AT3G57920.1 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15); DNA binding / transcription factor4401e-043
AT3G15270.1 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor2931e-026
AT5G43270.2 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor2893e-026
AT5G43270.3 SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor2893e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
191  25%
 
111  25%

Unigene MembersMember information