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Information for unigene UN07309

FASTA Sequence
Unigene ID: UN07309Length: 1535 SSR 
CTTGGGACTTGTCGAGACTCGAGAGCATCAAAAGCTTATAAACTCTTCTTCAGATTCTCACATTTACTAACCTAATAATCAGTCAG
GTCATTCATTTTGTAATAATAATGGAGACGACGCCTCCTCCTCCTCCTCCTTACCACCTCCCATCGAACCCCAAATCAGCCTCGCG
TTCGAAAGAAGAAGAAAAAGAAGAAGCTCCACCCAATCTTGTCTCTCTTGAATTGGTGTGTGTGTCTCCGAAGAGCAAAGACACTC
CTCCTCCAAGAGCCTCTTCCTCTCCTTCCCCTCCTCTCCGCAAATCGAAGACCCGTTTAGAGGATCGACTCCAAATGGCATCTGAG
GATAATGCTGCTGCGTTGGTGGTGGTTCGGAAGCAGGGCAAGGGGAAAGGAGGGCAAAAGGGTCCTTTGGCTTCTCCCAGGAATAA
TCCCCGAAGATCCAGGCGAAGGTCCGAGCCTGTGGCGGCGGAGAAAGAAGCTAATGTTGTAGTCGACGAAGCCCCAAAGCCCAGAA
AACGCAAGCCCAACAACGTTCGCCCTAAGAAGGAAAAACAAACTTCGTCTTCGAATCTTCCAAATGATGATGATGCTTCTTGTCAA
AGCGATCTGAATCGGATTGGAGAGATTATCAGTGATCTGGTAATGTGGAGGGACGTTGCGAAATCCACACTCTGGTTCGGTTTTGG
ATGTCTTTCTTTCCTTTCTTCTTCCTTTGCCAATGGACTCAACTTTAGCCTTTTCTCGGCGCTTTCCAACCTTGGACTTGTGTTAC
TTTGCGCCTCCTTCTTGTCAAACACTCTTCTTTCTCAAAGGAAAAACGAAGAGACCAAGAGAGAGTTCCATGTGAGTGAAGATGGT
GTCTTGCGCTTATCCAGACGATTCCTTCCCGCTGCCAACTTTCTCATTTCAAAGACCACTGTGCTTTTTTCTGGAGAACCATCCAT
GACTCTCAAAGTGACACCATTTCTGCTTATCGGAGCTGAGTATGGCCACCTCATTACGTTCTGGAGACTATCCGCTTTTGGTTTCT
TCCTCAGCTTCACCGTCCCAAAGCTGTATTCGTGTTACACCCATCAAATTAGCCAAAAAGTAGAAAGAGTGAAAACGAGTTTAGGT
GAAGCATGGGAAATGTGCTCACACAAGAAGATCTTGGCTGGCTCTGCGGTGACAGCCTTCTGGAACTTGACAAGCATTAGAACCCG
GATTTTTGCAGTGTTTATCATCCTAGTGATATTTCGGTATAGGAGACAGAATCTAGTACAGCTAAATTCCGAGGAAGCTGTGCCTG
TTGAGAATGAGAAGCAAGAAGAAGAAGAAGAAGAAACACTTCCACAGGAAGAGGAGACGCAGCAGCAGCCACAAGAGGAGCAAGCG
TTAGCTATGGTGGTTGCAGAAACAGAAGGATCAAAGAAACTCTGAGTGTTTGTAACTTTGTAACTGTGTTAAAACCCCATTTAACA
GAGATGCAGTTTTAAGTCTCTAGTTAGTGTGATAGGGTATCAGTTTTTCCATATGACATGAAAAACCTTGAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179649 reticulon-like protein B17 [Arabidopsis thaliana]14559e-159
AAO37135 hypothetical protein [Arabidopsis thaliana]14405e-157
NP_973488 reticulon-like protein B17 [Arabidopsis thaliana]10651e-113
AAO37136 hypothetical protein [Arabidopsis thaliana]10508e-112
BAE99357 hypothetical protein [Arabidopsis thaliana]10042e-106

Swiss-Prot top hits (Blast detail)Scoree value
Q6DR04 Reticulon-like protein B1714554e-160
Q8LDS3 Reticulon-like protein B1810012e-107
Q56X72 Reticulon-like protein B214374e-042

TrEMBL top hits (Blast detail)Scoree value
B9RVU8 Putative uncharacterized protein8893e-093
B9HGQ3 Predicted protein8741e-091
Q6K5U2 Os02g0302900 protein6098e-061
B4F847 Putative uncharacterized protein6043e-060
B9F565 Putative uncharacterized protein6025e-060

Arabidopsis top hits (Blast detail)Scoree value
AT2G20590.1 reticulon family protein14553e-161
AT2G20590.2 reticulon family protein10655e-116
AT4G28430.1 reticulon family protein10011e-108
AT5G58000.1 LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source: NCBI BLink).4411e-043

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  33%
 
122  67%

Unigene MembersMember information