RadishBase

| | | |

Information for unigene UN07322

FASTA Sequence

Unigene ID: UN07322	Length: 1933	SSR
GATAATATCTCCGTCTTTTCTTGGGTCTCTCTCTCTCAACACACTTTATCCAAGATATATATCATCCCATTACATAATAAATTCAC AACCTTTTCATTCTCTAACGTTTCTCTTGTGTCTAATTCTCACACGGATCAGATTCTTCATAGTTTAATTTCAAAGATTTTTGTTT TTCTTCCTGGGTTTTGTTTTGACTCTGCAACTGAATCCACAAAGTTTTCCCTTTTTCCCGGGAAGCAAGAGTTATAGCTGTTCTTT AGTTCAAGCCAAGCAAAAGATTGTGCATAATTCAGTTGCGTTGATCTGTAGAATGAGACCAATCGTTAGATCATCGTCTTCTCTCA GTAGAGTTAGATGGGCTCTGAGGAATCAAGAACGCAACTCCTCAACTTTCTGCTCCAAAAGCCGCAATATTTTGATCGGTGTCAAT AAAAACGAAGCTCTGGTGAACACAAGCACTTGTAACTCAACTCTGTTTTCGAGGTTGAGTTTCTCCAGAGGTTTTTCAGCAGAGGC AGTTGAAGCAGCTGATGCTGTTAGGCTCACTGTCTCATCCTCAGATGTGAATAGAACAGGACCACTTGTTGAGTATGAGAGAAGAA TCAGTGATGGGGAGCTCATGACTGGTGATGTCTGCCAACTTGGTGCATTGAAAGAGCTTCAGAGACTACATGATGAGCTTGTGGAA TCAGTAGATACATGTCGTCTAGATCGTTACAACACTTCTGATAAATCATCAAGAAGCCGTTGGTTCTGGTCTAGGATCATGCCACA GTCTTCTGTCTCACCCGTTAAAGGATTGTACCTCTATGGAGGTGTAGGCACAGGAAAAACCATGTTGATGGACTTATTCTTTGATC AACTGCCTTGCACTTGGAAGAAGCAGAGGATACATTTTCATGATTTCATGTTGACTGTTCATAGTCGATTACAAAAGCACAAGGGT TTACCAGACCCACTTGAAGTTGTTGCTCAAGAGATAGCTCATGATGCAATCTTACTATGTCTAGATGAGTTCATGGTAACTGATGT GGCAGATGCTCTGATACTTAACCGACTCTTTGGACATCTCTTCAGCAATGGCATAATTCTTGTTGCCACATCGAATAGGAATCCTG ATAAACTCTATGAAGGAGGACTCCAAAGAGATCTCTTCCTACCTTTCATTGCCTCACTAAAGGAAAGGAATGTGGTTCATGAGATT GGCTCAGCCGTTGATTACCGGAAACTAACTTCGGCTGAGCAAGGATTCTATTTCATCGGTACAGATCTTTCCACCCTTTTGAAACA GAAGTACCAAGAACTGCTTGGAGGCAATCTTGTTGCTCGTCCACAGGTAGTAGAAGTGGTCATGGGAAGAAAGTTACAGGTTCCAT TAGGTGCTAAGGGATGTGCATACTTCCCTTTTGAAGAGTTATGCGATCGACCTCTTGGAGCTGCTGATTACTTCGGACTGTTCAAG AAGTTTCATACTCTTGCATTGGAAGGAGTACCAGTCTTTGGGCTTCATAACCGGACTGCTGCGTATAGATTCGTCACGCTAGTCGA TGTGATGTATGAGAACAAAGCAAGGTTGCTGTGTACAGCTGAAGCAACTCCTCAAGAACTCTTGGAAAAGATTGTAACAATTTCTG ACGCGAAATCAATGTCTCCAAGAACATCGTCGAGATCAAGAAAGAACGATGTTTCCGAGCTCTGCGTGGACAACGAGTTGGGTTTT GCAAAAGATAGAACCATCAGCAGATTAACAGAAATGAACAGTAAGGAGTACTTGGAGCAGCATGCCATAACACATAATCTGCAACG CACATAACAAACACACATACAAGTTCCTGTGTTGTTTTCTTCTTCAAGGGATTGAAGTGTAACTTTGGTTGTATTTTCTGTGTATC ATTTGAGAACCATAGAAAAATATAATACCATTCGTTGTTGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002867344 hypothetical protein ARALYDRAFT_491701 [Arabidopsis lyrata subsp. lyrata]	2274	1e-253
NP_567847 AFG1-like protein [Arabidopsis thaliana]	2268	6e-253
CAB79767 putative protein [Arabidopsis thaliana]	1789	2e-197
CAN65875 hypothetical protein VITISV_002904 [Vitis vinifera]	1730	2e-190
XP_002271848 PREDICTED: hypothetical protein [Vitis vinifera]	1729	2e-190

Swiss-Prot top hits (Blast detail)	Score	e value
Q8WV93 Lactation elevated protein 1	648	2e-066
Q5TYS0 Lactation elevated protein 1 homolog B	556	9e-056
Q3V384 Lactation elevated protein 1	492	2e-048
Q32PX9 Lactation elevated protein 1	490	4e-048
O42895 Uncharacterized protein C115.02c	490	4e-048

TrEMBL top hits (Blast detail)	Score	e value
Q8L517 Putative uncharacterized protein	2268	4e-253
Q9M0B1 Putative uncharacterized protein AT4g30490	1789	1e-197
A5BPI5 Putative uncharacterized protein	1730	1e-190
A9PGB5 Predicted protein	1725	4e-190
Q5XET7 At4g28070	1710	2e-188

Arabidopsis top hits (Blast detail)	Score	e value
AT4G30490.1 AFG1-like ATPase family protein	2268	2e-255
AT4G28070.2 AFG1-like ATPase family protein	1710	1e-190
AT4G28070.1 AFG1-like ATPase family protein	1221	6e-134
AT2G25530.1 AFG1-like ATPase family protein	341	6e-032

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			33%


10	2			67%

Unigene Members	Member information