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Information for unigene UN07323
| FASTA Sequence |
| Unigene ID: UN07323 | Length: 1290 |
SSR | | GGGGAAGCAACGAAGCTCGCCGAGACAGACAGAGAGAGAGAGAGAAAGAGAGAAACCATGTCGAACACAAACGAACCAGCGAAGAC
TCTTCTGCCTTACTTGCAACGAGCCGACGAGTTGCAGAAACATGAACCGCTTGTTGCTTATTACTGTCGGCTATACGCCATGGAAC
GAGGATTGAAAATTCCACAGAGCGAGAGAACTAAGACCACCAATTCGATCCTTATGTCCCTTATTAATCAGCTCGAAAAGGATAAG
AAATCATTGACTCTGTCCCCAGATGACAGTATGCATGTGGAGGGGTTTGCACTAAATGTCTTTGCAAAGGCAGACAAGCAGGATCG
TGCAGGACGAGCTGACTTGGGCACTGCCAAAACATTTTATGCTGCAAACATCTTCTTTGAGATTCTGAGCCAGTTCGGCCCCGTTC
CTCCTGATATAGAGCAGAAACAGAAGTATGCCGCTTGGAAAGCTGCTGACATAAGGAAAGCAATTAAAGAAGGAAGAAAGCCCACT
CCAGGTGATCCTGTTGATGATGAAACTGATTTATCCATCCCATCAAGTGGTCCTAGTGGCTCCTATGATCTTGGTCCTACTGATAC
CAACGTACCAAGTCAACATAGAACAGAGCCTGGCCCATCCCACGACTCGAATGATGGCTCCAGCCACCACCATTTCCCTGAAGTGC
CACAACATCAACTACCTCCTCCCAGGTTTCATGACAATCCTAACAACAATTATCCAACAGATGTCCCGCCTCCACTACCATCTTCC
TACCCTCATACTTACAACCATCAATCATACCACCAAGACCCGACACAACACATGCCGCCACCACCACAAAACTACCCATCTCATGA
GCCTTCGCCAAGCTCTCTCCCTAATTTCCAGTCTTACCCTAGCTTCAGTGAGAGCAGCCTCCCAGCCACTCCGTCCCACTACCCTT
CTCACTTCCAGAACCCTGAACCTTACTATTCATCATCAAACGGGCGTGTCAATGTTGCTCCCGTGCTAGATCCTCCGGCTCAGAAG
TACCATTACGACAGCAGCTACCAGCCAGGGCCAGAGAAGATCGCAGAGGCACACAAGGCTGCTAGATTCGCTGTAGGAGCCTTGGC
TCTCGATGAAGTCTCTACTGCTGTAGAACATCTGAAGAAGTCACTCGAGTTGCTTACGAATCCATCAGCGGGTCACTGATATTTCA
TTATGTTTTAATCTATGAACCTTGGGTTTGAGATGCGTGTATGAGCTCACAATCACACCATGGATTTGTTATTAACTTTTCTGGCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867543 hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] | 1188 | 6e-128 |
| NP_194405 vacuolar protein sorting-associated protein VTA1 [Arabidopsis thaliana] | 1174 | 3e-126 |
| XP_002277187 PREDICTED: hypothetical protein [Vitis vinifera] | 863 | 3e-090 |
| XP_002317288 predicted protein [Populus trichocarpa] | 845 | 4e-088 |
| XP_002531202 Protein C6orf55, putative [Ricinus communis] | 825 | 8e-086 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q55B11 Vacuolar protein sorting-associated protein VTA1 homolog | 352 | 2e-032 |
| Q9NP79 Vacuolar protein sorting-associated protein VTA1 homolog | 288 | 6e-025 |
| Q5R5W5 Vacuolar protein sorting-associated protein VTA1 homolog | 287 | 8e-025 |
| Q32L63 Vacuolar protein sorting-associated protein VTA1 homolog | 286 | 1e-024 |
| Q9CR26 Vacuolar protein sorting-associated protein VTA1 homolog | 275 | 2e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SZ15 AT4g26750/F10M23_90 | 1174 | 2e-126 |
| B9HZN8 Predicted protein | 845 | 3e-088 |
| B9SYY3 Protein C6orf55, putative | 825 | 5e-086 |
| C0PM77 Putative uncharacterized protein | 800 | 4e-083 |
| B7ZX36 Putative uncharacterized protein | 789 | 8e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G26750.1 hydroxyproline-rich glycoprotein family protein | 1174 | 1e-128 |
| AT4G18670.1 protein binding / structural constituent of cell wall | 161 | 3e-011 |
| AT3G19020.1 leucine-rich repeat family protein / extensin family protein | 142 | 5e-009 |
| AT1G23720.1 proline-rich extensin-like family protein | 119 | 2e-006 |
| AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall | 119 | 2e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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