RadishBase

| | | |

Information for unigene UN07394

FASTA Sequence

Unigene ID: UN07394	Length: 1606	SSR
CTCTCCACGCGATGAACGGAGAGAAAGATCTGGCCGGAGACGGAGAGTGCTCACGAACCAAAACCTCAAAGCCTCGATTCGCTCAT CTAAACACCGACAAAACCAACCAGTTTCATCACAAAGGCGTCGTCAACGACGACTTCCTCAGCGTCCGATCCAGCAACAACAACAA CAACGTCGACGCCTTCTCTTCGAAATCATCTCCCAGATCCGGAAACGAGCTCACCCTCAGCTACCTCTGCGAGAACCGCGACCTCT CCGAGAAAATCGCCGAGAGCCAAAAGGGTAAAGAGGTCGTTACCTTCTCCGAGAACAATCCGAACCAGGACGAGGAGAAATGGATC GAGAGAGACTTCTTCAATCTCAGAGAGCCAAATCCAAACTCCTCTTCCAAGCGTAAGTCTCACCACGACAACGAGGTCGTCAAACA AGAAGAAGCGGAAGGAGAAGGAGAAGAAGAGAAGAAACAAAAGATCGAGACTCTAAACCTCTCCCTAGCTCTACCCGACGTCTCCC TCTCCCTAACGGCGTCAAACGCCGTCAAAAGACCGAGGGTCAACAACAACAGCGAGCGGACCACGACGTCGTTTTCCAACGACTTC ACGGCGACGACGGCGCCGTCCATGTCCTACTCCTACTCCCACCCTTTCTCCCACAACCTCAGCTGCTCCGCCGACTTCGACTGCTC CGCCGAGCGAGACGACCGCATCTGGTGCGCCGGCGAAGGAACCAACGGATCCGTCCACAGCCGTTTCCGTCCCATCGCCGACGGCG TCGGCGTCGCCCTCGCCAGAACCCCCGCCGCCGTCAAACCGTCCTCCTCCTCCGACTACTCCTTCTTCCCCTCCGAGCTACCTGCT CGCCCGGGGATGGAAACAGCTACAACGATCTCCGGCGATTCGAGAAAAAACTTAGAACAAAACGACGACGTTAGATCAGAGAGGGT CCTATACGACATCGTTTCGAAGTCTATTTCCTCCGCAGCGTTGATTATTCAAGGGATGGCTGATGAAACACTCGAGTCAGCTAAAG AGTACTTACGGAACTTAATCGATTCTCCGGATAAGAAGGAGAAGCTGACGAGTCTTCAGAGCCAGATCGACAGAAGATCCGATCTC TGCAAAGAGACCTTATCCAAATGCGTCAAGGATCAGCTCGACATCTTGGTCGCCGTGAGAACCGGGCTCAAGTACTTCCTCTCGGG TAAAATCCGTATCCCGATGAACGAGCTGGTGGAGATCTTTATGTTTCTGAGATGCAGGAACGTGAACTGCAAGAGCCTGTTGTCTG TCGACGACTGCGAGTGCAAGATCTGTTCCAACAACAAAGGCTTTTGCAGCTCGTGTATGTGTCCTGTTTGCTTGAGGTTTGATTCG GCGAGTAATACTTGTAGTTGGGTGGGGTGTGATGTTTGCTCTCATTGGTGTCACGCTGCGTGTGGGATTCAGAGGAATCTTATTAG GCCGGGACATAGCTTGAAGAGTCCTAGGGGGAATAAGACGGAGATGCTGTTCCATTGCGTTGGGTGCGGTCATATGTCTGAGATGT TTGGGTTCGTTAAGATGTGTTTGTGTGTTGCGCTAAGAATTGGGGACCTGAGACGTTG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002892826 hypothetical protein ARALYDRAFT_471661 [Arabidopsis lyrata subsp. lyrata]	2055	2e-228
AAF79245 F10B6.14 [Arabidopsis thaliana]	2031	1e-225
NP_563958 OBERON 3 protein [Arabidopsis thaliana]	2031	1e-225
BAK02333 predicted protein [Hordeum vulgare subsp. vulgare]	905	6e-095
XP_002468196 hypothetical protein SORBIDRAFT_01g041500 [Sorghum bicolor]	877	1e-091

Swiss-Prot top hits (Blast detail)	Score	e value
O10341 Uncharacterized 29.3 kDa protein	200	1e-014
Q9FPQ6 Vegetative cell wall protein gp1	166	1e-010
P19275 Viral protein TPX	158	1e-009

TrEMBL top hits (Blast detail)	Score	e value
Q94B71 Putative uncharacterized protein At1g14740	2031	1e-225
Q9LQV7 F10B6.14	2031	1e-225
C5WRK9 Putative uncharacterized protein Sb01g041500	877	7e-092
C0HG08 Putative uncharacterized protein	859	8e-090
B6SKV4 CONSTANS interacting protein 6	851	7e-089

Arabidopsis top hits (Blast detail)	Score	e value
AT1G14740.1 unknown protein	2063	1e-231
AT3G63500.1 unknown protein	510	1e-051
AT3G63500.2 unknown protein	510	1e-051
AT3G07780.1 OBE1 (OBERON1); protein binding / zinc ion binding	447	3e-044
AT5G48160.1 OBE2 (OBERON2); protein binding / zinc ion binding	440	2e-043

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			33%


7	2			67%

Unigene Members	Member information