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Information for unigene UN07410
| FASTA Sequence |
| Unigene ID: UN07410 | Length: 1219 |
SSR | | AATAAAATAGTTTTCTATAAAATAGAAGTACATGAACATAATAAAACGAGTTTTGCTTGCGTTCGCATAAGACATACAAACAGCAG
GAGAAGAAAATAATCTCAAAGTGATTGAAAAAAAAAAGACTTATTCTCGAAAGCCCTACAATGGCTATAAATCCTCTTTTCCAATA
TCTCACACTATCAAAAAAAAAAAAACAAGAAAACAAAAGAAACATATAACCTCTAGTACAATCTGCCTCAAAACACCAAACCTTAA
GACATAACCCCCAAGAAGAAGAACCATTACATGACAATAAAGAAAACTAAGGAAGAAGGATCATTCTTGTTTTTTTTTTGTTTTTT
TTTTGTTTGAACTCTTCTTATGTATTACTGCCTCGCCGGAGACTTGACACAGTTTCTACCGTCCCTCGTTGAAAGAAAAAGAAAAA
AAAAAGAAAGCAGAAAAGAAAAAGCCTATGAAGAGGGAGGAGGACCAATGAATTTAGAAAACCAAACCATGAGGGATTTTTTTCTG
GTTAGCTCTAAGCTGATGATGATATGATCAAAGTTTTGTCCTCATGGGCTTTGCTTTGTATGAAGATAAATCTAAGAGATTCCAGA
TCGTTCACCTTGATGGCTCGCCTCTGTTTGGTTGTCTCTTGTTCACACTGTAACTGCCAACATAACCTGGAGATGAACTTCTACCT
GAAACATCCGAGGAAGGACCTCCTCCTCCTCCTCCAATCCCATAGCTAAAAGAAGCAGGTCCTTCCGTCTCAGGCGTCGGTGATCT
CCACGTGGGATCACTATACACCGCACCATTCCCATAAAACTCTGCAAGCCCTGCTCCATCGTAACCAATGTTGTTGTTGGCAGCCG
AGGCAGAAGAGAATGAAGAAGACGACGGCGCTGCCGCCGCCTTGCTAGGAGGCCCTATGTTCCTCGCTGCATATCCACCTGCTCCC
AAACCAAAGCCAGACTCACCGTTTCCTCCGTAACCAAACTTCACATTCTCGTTACTACCAACAACAGCATTGTTTCCACCTCCTCC
AGAAGCACCCCAGTTTCCAAATGGACCGCTAAGAGTGTTGTTCCCATTTGTTGATCCTCCTCCTCCTCCCATGTATGTATTGGAGT
TTGAGTTTAAGTTTGTAGCGCTGTTGTTGTTGTTGTTATAGTTAAGACCACCGTTGTTTCCCCATAGGTTCCTTGTAACCGAACTG
AAGAAGGACGAGTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_850539 RNA recognition motif-containing protein [Arabidopsis thaliana] | 797 | 1e-082 |
| XP_002882552 hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp. lyrata] | 796 | 2e-082 |
| AAF21191 putative RNA-binding protein [Arabidopsis thaliana] | 776 | 3e-080 |
| NP_566321 RNA recognition motif-containing protein [Arabidopsis thaliana] | 776 | 3e-080 |
| AAK92717 putative RNA-binding protein [Arabidopsis thaliana] | 776 | 3e-080 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NL38 N66 matrix protein | 156 | 1e-009 |
| P08673 Circumsporozoite protein | 152 | 3e-009 |
| Q9UI36 Dachshund homolog 1 | 140 | 8e-008 |
| Q54M35 Putative lysozyme-like protein | 140 | 8e-008 |
| Q966L9 ATP-dependent RNA helicase glh-2 | 139 | 1e-007 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W555 AT3g07810/F17A17_15 | 776 | 2e-080 |
| Q94A00 Putative RNA-binding protein | 776 | 2e-080 |
| Q9SFD3 Putative RNA-binding protein | 776 | 2e-080 |
| A5C205 Putative uncharacterized protein | 223 | 3e-016 |
| Q0WMC1 Putative RNA-binding protein (Fragment) | 191 | 2e-012 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 798 | 4e-085 |
| AT3G07810.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 776 | 1e-082 |
| AT5G61030.1 GR-RBP3 (glycine-rich RNA-binding protein 3); ATP binding / RNA binding | 155 | 1e-010 |
| AT3G18810.1 protein kinase family protein | 137 | 2e-008 |
| AT4G13340.1 leucine-rich repeat family protein / extensin family protein | 121 | 1e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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