Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN07425

FASTA Sequence
Unigene ID: UN07425Length: 1138 SSR 
CTCCGGACTCTCTCACTAATCTCTATCTCTCTCTCTCTGAATGTCGCAACAGAGAGAGTAAGCTTAAAAAATCTAAGCAACCTTCT
CCTCCTCATGGAGTCCCTCACATCATCAAATCCTTCCTTCTCTCCTTTCTCAAAAAGCTTATCTCTTTACCCTTCTTCTCCTCGCT
ACTTCCTTAACCTACCCTCTATCCACAAACTCGAAGCTCCCAAATGCTCCAAACCATCCTCCAATCCCCAACCTGATTCCAATCCA
AAGCTAACCCCTTTCCGCGTACTGCGCCCAATCATCCGAATCTTCAAAGGTCTGGTCTCCTCTCAGTCCCGGCACTGGACGTCGCG
TTTCCGAGCTTACAGGGACGACACGGCGTCGTTTTCGGAACACTTTTTCCCTGGAGAGGATTTGAACCGGAGCGGGGGTCTGGGGA
TCGCCCTCTTGAGCGTGACGGCTTCCGCCAAGGTAGATCAGTCCTTTCGTGGCGACGCTCTCGGCGAACCCGACGTTCGTGTCGGC
GGTGTTCGCGTGGTTCTTCGCGCAGACGAGTAAGATGGTTATCAATTTCTTCATCGAGAGGAAGTGGGACTTGAGTTTGCTGTTTG
CCTCTGGTGGGATGCCTTCTTCTCATTCTGCTCTGTGTATGCCTTTGACGACGTCTGTTGCGCTTTGTCATGGGGTTGCGGACTCG
TTGTTTCCTGTTTGTTTGGGGTTTAGTTTGATTGTCATGTATGATGCTATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGT
TCTGAACTTGATCATAAGGGACTTGTTCGAAGGGCATCCCATCAGTCAAAGAAAGCTAAAAGAATTGCTGGGTCACACTCCTTCGC
AGGTTCTCGCAGGAGCATTAGTTGGTATTGTGATCGCCTGCTATTGTTGCCAAGGCTATCTAGTCTCAGCCTAAGATCCCCTTAAC
GCATAAGTTTTCTGATTGATTATTAGCTGAAAAACTCTGTACTTTGAGTACAGCTTAGTATCAATTTGTTTAAGATTTGAGGTGTA
TCATATGTTGTGTTCAGTAATAGAGAAAACTGGTGCTTCTTTCTGTTTATTTTTTGGTTCTGAGTTTTTGTAATCTCTAGAAAATA
CAATGAGAGAGTTTACTTTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002876638 hypothetical protein ARALYDRAFT_907735 [Arabidopsis lyrata subsp. lyrata]7656e-079
NP_567117 Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Arabidopsis thaliana]7621e-078
CAB71107 putative protein [Arabidopsis thaliana]7621e-078
XP_002301410 predicted protein [Populus trichocarpa]6922e-070
XP_002523346 conserved hypothetical protein [Ricinus communis]6822e-069

Swiss-Prot top hits (Blast detail)Scoree value
O32107 Uncharacterized membrane protein yuiD2374e-019

TrEMBL top hits (Blast detail)Scoree value
Q8RXV2 Putative uncharacterized protein7629e-079
Q9M361 Putative uncharacterized protein F15G16.1607629e-079
B9GR15 Predicted protein6921e-070
B9SBH7 Putative uncharacterized protein6822e-069
A5B2T6 Putative uncharacterized protein6732e-068

Arabidopsis top hits (Blast detail)Scoree value
AT3G61770.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 613 Blast hits to 613 proteins in 199 species: Archae - 0; Bacteria - 356; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).7634e-081
AT1G67600.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24350.1); Has 627 Blast hits to 627 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).3217e-030
AT1G24350.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).3073e-028
AT3G21610.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 626 Blast hits to 626 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 158 (source: NCBI BLink).2832e-025
AT1G24350.2 INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase/vanadium-dependent haloperoxidase related (InterPro:IPR003832); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67600.1); Has 622 Blast hits to 622 proteins in 204 species: Archae - 0; Bacteria - 365; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).2822e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  33%
 
92  67%

Unigene MembersMember information