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Information for unigene UN07446
| FASTA Sequence |
| Unigene ID: UN07446 | Length: 1496 |
SSR | | CGGCACGAGGCTCCGTTATCTTCTCAGACCAAATCTATCCCCTCTCTCTCTCTCCTCGCTTCCACCATTAACAACAGAGAAGCTCC
ACAACAAGCTTTCTCTATTACACAGAAATAGAGAGAGAGAGGTCTTGAGTTCCAGCAGAGGTGGTGTTGAGTGAGTACTCCAGATC
GGATCAGGATTCTTCAAAGATGCAGACATCAAACAACGGTCCAGATTCGTCACCAGCCGGAACAACGCCACCGTTGCAGCAGCCGA
CTCCTCCTCCGCCGCAGCAACAACACTGGCAAAACCAGCAACAATGGATGGCGGCGATGCAGTACCCCATGGCGATGATGCAGCAG
CAACAGATGATGATGTACCCTCACCAATACGCTCCGTACAGCCAAGGTCACTATCAGCATCCTCCTCAGTTTCACTACGCTCCTCC
TTATCACCAGCAGAATCATCAGCAGCGTGGTGGATCTGGTGGTGGAGATGATGTGAAGACTCTCTGGGTTGGTGATCTTCTTCATT
GGATGGATGAGACTTATCTCCACACCTGTTTCTCTCACACCAACGAGGTTTCTTCAGTGAAAGTTATAAGAAACAAGCAAACCAAT
CAGTCAGAAGGGTATGGTTTTGTCGAGTTTCTTTCACGTTCGGCAGCTGAGGAAGTCCTTCAGAGCTATAGCGGTGTAACCATGCC
CAACGCAGACCAGCCCTTCCGTCTAAACTGGGCTTCTTTCAGCACTGGTGAAAAGAGAGCTTCAGAGAACGGTGGTCCAGACCTGT
CGGTATTCGTGGGAGATTTGGCTCCTGACGTGACTGATGCTGTACTGCTCGAGACTTTTGCTGGATACCAATCTGTTAAAGGTGCA
AAGGTTGTGATCGATTCCAACACTGGGCGTTCCAAAGGTTACGGGTTTGTCAGGTTTGGTGATGAGAGCGAGCGGTCAAGGGCGTT
GACTGAGATGAATGGTGCTTTCTGCTTAAGCAGGCAAATGCGTGTTGGTATTGCAACTCCTAAAAGAGCTGCTGCTTATGGCCAAC
AAAATGGTTCACAAGCTCTGACATTAGCTGGTGGACATGGAGGGAATGGGTCAGTGTCTGATGGGGAATCAAATAACTCAACAATA
TTTGTTGGGGGCATTGACGCTGATGTTACTGAAGAAGACCTCAGACAACCTTTCTCCCAGTTTGGGGAGGTTGTTTCGGTAAAGAT
CCCAGTAGGAAAAGGATGCGGTTTTGTCCAATTTGGTAACAGGCAGAGTGCTGAAGAAGCCATTGGGAACTTGAACGGGACAGTCA
TCGGGAAAAACACTGTCCGGCTTTCTTGGGGACGCAGCCCAAACAGACAGTGGAGAGGTGACCAACAATGGAACGGAGGATACTCA
AGAGGACAAGGTTACAGCAACGGATATGCTAATCAAGACTCAAACATTTATGCTGCTGCATCGGCTGCTGTCCCTGGAACTTCTTG
AAAGTGTTGGTTATGTCTCGTGAGTCCTGCTGGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894197 hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp. lyrata] | 1815 | 2e-200 |
| NP_175383 RNA-binding protein 47A [Arabidopsis thaliana] | 1770 | 3e-195 |
| NP_188544 RNA-binding protein 47B [Arabidopsis thaliana] | 1623 | 3e-178 |
| XP_002885294 RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata] | 1614 | 3e-177 |
| AAM67293 nuclear acid binding protein, putative [Arabidopsis thaliana] | 1512 | 2e-165 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O60176 Uncharacterized RNA-binding protein C23E6.01c | 553 | 1e-055 |
| O13759 RNA-binding post-transcriptional regulator csx1 | 542 | 3e-054 |
| Q01085 Nucleolysin TIAR | 382 | 9e-036 |
| P52912 Nucleolysin TIA-1 | 360 | 3e-033 |
| P31483 Nucleolysin TIA-1 isoform p40 | 352 | 3e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WW84 At3g19130 | 1623 | 2e-178 |
| Q8LFI9 Nuclear acid binding protein, putative | 1512 | 1e-165 |
| Q9LJL7 DNA/RNA binding protein-like | 1509 | 3e-165 |
| B9RY32 Nuclear acid binding protein, putative | 1369 | 5e-149 |
| B9HRX8 Predicted protein | 1366 | 1e-148 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G49600.1 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding | 1771 | 7e-198 |
| AT3G19130.1 ATRBP47B (RNA-binding protein 47B); RNA binding | 1623 | 1e-180 |
| AT1G47490.1 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C); RNA binding | 1071 | 1e-116 |
| AT1G47500.1 ATRBP47C' (RNA-binding protein 47C'); RNA binding | 1047 | 6e-114 |
| AT1G11650.2 RNA-binding protein 45 (RBP45), putative | 884 | 5e-095 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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