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Information for unigene UN07450
| FASTA Sequence |
| Unigene ID: UN07450 | Length: 1379 |
SSR | | ATCGTTCAACAACAGCAACATTCACTGTCTATCTTTGGTAGATCTTGTCTTCAAACACACACCACCATCATCAGGTTAGCAAATAA
TCTATCTTTTGATTGTGAGATTTGATCATGTGATTTTTCTTGAAAATTTTGAAAAAAGGAATCATCTTTTGATTGTGTGAGCATAT
AGATAGATAGTCATGGCTAGGTCTGGGGTTGATGAGACATCAGAATCTGGAGCTTTTGTAAGAACAGCATCAACATTCCGTAGCTT
TGTCTCACAAGATCCTGCTTCTCTGTTCCCACCCGAATCCGGAAGATACCATCTTTACATTTCCTACGCTTGTCCATGGGCTTGTA
GATGTCTCTCTTTCTTGATGCTCAAAGGTCTTGACCAAGCTATCACCTTCTCGTCGTGTCACACAATTTGGGGAAGAACTAAAGAA
ACTGATGACCATAGAGGATGGGTTTTCCCTGATTCAGACACTGAGCTCCTTGGAGCTGGGCCTGATTATCTTAATGGTGCCAAGAC
TGTGAGAGACCTCTATGAGATTGCTAGTCCCAACTATGTGGGAAAGTACACTGTTCCTATTCTGTGGGATAAGAAGCTTAAGACTG
TGGTTAACAATGAGAGCTCAGAGATAATCAGGATGCTCAACACTGAATTCAACGGCGTTGCGAAAAACCCGTCGCTGGACCTTTAT
CCTTCTCATCTTAGAGAAGCAATCGACGAGACTAATGAGTGGGTTTTCAATGGGATAAACAATGGTGTTTATAGGTGTGGGTTTGC
TAGGAAACAAGAACCTTACAATGAGGCAGTGAACCAAGTGTTTGAAGCAGTAGAGAGATGTGAGACAATACTCGAAAAACAACGAT
ACATCTGTGGAAACACTTTTACCGAAGCAGATGTTCGGTTATTCGTCACCCTTATAAGATTTGATGAGGTTTACGCGGTTCACTTC
AAATGCAATAAGAGACTCTTAAGAGAGTATCCGAATATCTTCAACTACATAAAAGATGTATACCAAATCAATGGAATGAGCAGCAC
TGTGAAAATGGATCACATCAAGCAACATTACTACGGAAGCCACCCTACGTTAAACCCGTTTGGGATCATCCCTCATGGACCAAACA
TCGATTACTCTTCGCCTCATGACCGCGACAGATTCTCCTCCTGAAAAAGACCAAACATCAAAGGTCAATGTTTATCACCTGTCCTA
GAAATAAAAAAGCTTTCAAAGAAACATGTCCCTTTGTATTTCAACTTTAAAGTCAATAATATACTTGTGTGTGTGTGTGTGTGTTG
CAACTCATGTTACATCTGAATTTTGCAAATTGATTGTATGTTTGGAGATTAGTTTTAAAGTCAATAATACTTGGATATGTTGCAAG
CCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_199315 putative glutathione S-transferase [Arabidopsis thaliana] | 1603 | 5e-176 |
| XP_002865303 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1595 | 4e-175 |
| AAK44087 unknown protein [Arabidopsis thaliana] | 1442 | 2e-157 |
| NP_193723 Intracellular chloride channel-like protein [Arabidopsis thaliana] | 1442 | 2e-157 |
| ABC75353 Intracellular chloride channel [Medicago truncatula] | 1381 | 3e-150 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42620 Uncharacterized protein yqjG | 726 | 1e-075 |
| O94524 Glutathione S-transferase omega-like 2 | 610 | 3e-062 |
| P36156 Glutathione S-transferase omega-like 2 | 285 | 1e-024 |
| Q04806 Glutathione S-transferase omega-like 3 | 243 | 1e-019 |
| P48239 Glutathione S-transferase omega-like 1 | 219 | 7e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FL95 AT5g45020/K21C13_21 | 1603 | 4e-176 |
| Q8H121 Putative uncharacterized protein At4g19880 | 1442 | 2e-157 |
| Q94K62 Putative uncharacterized protein At4g19880 (Fragment) | 1442 | 2e-157 |
| Q2MGR6 Intracellular chloride channel | 1381 | 2e-150 |
| B9ICN7 Predicted protein | 1373 | 2e-149 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G45020.1 LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 907; Metazoa - 22; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | 1604 | 1e-178 |
| AT4G19880.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1635 Blast hits to 1635 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 158; Plants - 57; Viruses - 0; Other Eukaryotes - 480 (source: NCBI BLink). | 1443 | 7e-160 |
| AT5G44990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink). | 1258 | 2e-138 |
| AT5G44990.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19880.1); Has 1632 Blast hits to 1632 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 156; Plants - 57; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink). | 1258 | 2e-138 |
| AT4G19880.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione S-transferase, predicted (InterPro:IPR016639), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45020.1); Has 1621 Blast hits to 1621 proteins in 489 species: Archae - 12; Bacteria - 905; Metazoa - 23; Fungi - 155; Plants - 57; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). | 1073 | 6e-117 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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