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Information for unigene UN07509
| FASTA Sequence |
| Unigene ID: UN07509 | Length: 1741 |
| SNP | GAATATAGAAAGAATTGCTTAAATAACTCAGCGATCTAAAATCATAGTCACGATCTACTAAAAGTCAAGTTGAGCACCCGGACCAG
AGGTGGCCGAGAATCTTATGTCAAAAGGACTAACGACGATGAAAGAGGAGAAGGAGGAGTAGGAGGAGTCAGACGGAATCAAATGA
TTACGAGATAGACAATGAGACCAGGGAGAGCAAGAGCACTTAGTCAATTCACTTTGAGTACAGGAAAGTCTGCTGGTAGGAATTCC
TCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTGCTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTAT
GGGCATTGTAGAGAGTATAGAATATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAGGGGGGCTGCCAGAAAA
AAATGAACACGATCGAGGAGTTAGCTCCGCCGCGCAAGATCCTCGAACCTACCACGAACACCATCAGCGGCCTCTTTTCGTTCTCT
TTCCTGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTAC
CGGAATGCCTCCTTTGTCTTCGTATAAGAGCGCCTTTGCTAGTAAGGACGCAGGAAGCACAAAAACTTTAGTGAAGGACGTCTTCT
TCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACTGCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTA
GCTGGGGTTCCTACCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTTTGCGAGGTCCGAAA
GTGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAAGCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTT
TAGGGCTTGTTGGAGCTGCTGGGCATAACAAATCGAAGCCGAAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAAGG
GCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAAGTCGATCGTGCACCTGTCACTTATATAATAGC
CAGTCATCAATTAGAAGCAGGCAAAATGGTGGTGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCCCAGA
ATGACCATCCTAAGCCCTTATTCACTGTGTGAAGAACGGGGCAGTCCGCTGGAGTGTAGGCTTCTTGGCCACGCCCCCTGCTTATA
GATACGAAATACTTGAGATAAATTATCAAATAGGAAATTGCATACCATTAGCCGATATACGTATAGGAACATGGGTACATGAACCC
TATAAAATCCTTTACTTTTAGCTTTGAATTACTTATATATCTTATGAATTTTATTTCGCATTGGAAACGATTCTAGGAGAAGTTCG
AATCCGTTCCGTTTGGATATTGATCGGTCTTGGTTTGACATGGTTTACGTGTTACTGGTTTTCGGAAGAGTTAATATTCCTATTAG
CGTTACCCTTTCTTACCCTGCCTTTTGACTCGTATTTTGTTTGTACACAATTAACGGAGCCTTTTCGACATTTGTTGCAACGTCTT
CAATAGCATGCTCTTATTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCCTTTTGATCCCCAGTTGCTATGGAGACAAGACG
AAATACATCGATTTTCTATTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CBX48378 rpl2 [Brassica napus] | 1776 | 6e-196 |
| YP_717157 ribosomal protein L2 [Brassica napus] | 1766 | 9e-195 |
| NP_085516 ribosomal protein L2 [Arabidopsis thaliana] | 1717 | 4e-189 |
| AAM15498 hypothetical protein [Arabidopsis thaliana] | 1481 | 1e-161 |
| CAA57911 ribosomal protein L2 [Arabidopsis thaliana] | 1470 | 2e-160 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P93311 60S ribosomal protein L2, mitochondrial | 1717 | 2e-190 |
| P0C8K6 60S ribosomal protein L2, mitochondrial | 410 | 6e-039 |
| Q2F969 60S ribosomal protein L2, mitochondrial | 410 | 6e-039 |
| P92812 60S ribosomal protein L2, mitochondrial | 410 | 6e-039 |
| P93312 Uncharacterized tatC-like protein ymf16 | 331 | 9e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6YSN2 Ribosomal protein L2 | 1766 | 6e-195 |
| Q27GL8 Uncharacterized protein At2g07715.1 | 1481 | 7e-162 |
| A7KNJ3 Ribosomal protein L2 (Fragment) | 1241 | 5e-134 |
| B9U3M3 Ribosomal protein L2 | 1171 | 6e-126 |
| D5I399 Ribosomal protein L2 | 1140 | 2e-122 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| ATMG00560.1 encodes a mitochondrial ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 1718 | 1e-191 |
| AT2G07715.1 ribosomal protein L2, putative | 1481 | 4e-164 |
| ATMG00570.1 encodes a protein of unknown function. The transcript has extensive RNA editing at the 3' end. Protein has orthologous in other plants and sequence is similar to E. coli ORFs orf154 and orf131, both of unknown function. So far, similar proteins are found only in plants and prokaryotes. | 305 | 8e-028 |
| ATCG00830.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 136 | 3e-008 |
| ATCG01310.1 encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex | 136 | 3e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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