RadishBase

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Information for unigene UN07517

FASTA Sequence

Unigene ID: UN07517	Length: 1464	SSR
CTTATCTCCCTGTCTTTGCTCTCACTAAAAGACAAAACAATCACGAGAACACCTCTTTCCTTTCCTTCAAATCTAATCCCTTCCAT GTCGTCTCCTCCTCTCTTCTCCTCAGATCTCTCCTAAACAAAGCCATATGTCTTACCTTCTCCGCTCCGATCCCGTCTCCCGGATC CACCCGGAGCCTCAACCCGTAGACGACATCGACCACTTCGACCTCCTCCCCGACTCCCTCCTCCTCCTCATCTTCGATAAAGTCGC CGACGTCAAAGATCTCGGCCGCTGCTGCCTCGTCTCACGCAGGTTCCACTCCCTCGTCCCTCTCGTCGAGAACGTCCTCGTCCGCG TAGACTGCGTCATCTCCGACGACGACTCCTCCTCCTCCTCCGCCGAAGACGACCGTCGCTTCTCCCTCAACACCGCTTCGATCTCC GACGCCGCCGCCGGCGGCTCCTTCTCCGCCTTGTTCCGCCTCGTCTTCGCTCCGATCTTCAAACCTTTCCAAGCCCTGGGGCAGTT TCTAGGACCGAGACACTCATCTTCGTCTCTAGACGACGAGGCTGATCAGAGCGGCGTGACTCACCACTCTCCCACGCAGGTTTTAA AAAACTTCGCTGAGATTCGGTTTCTGAGGATCGAACTCCCGACCGGGGAGTTAGGGATCGAAGACGGTATCTTGCTCAAGTGGAGA GCTGACTTCGGATCCACGCTTGACAACTGCATGATACTCGGCGCCTCTTCCGTGACCACGACTACGAATCTCGACAGTCCTCTTCC TGATGATGATGACAATGGTAACATACCTGAGTCGTTCTACACCAACGGAGGACTCAAGCTCCGCGTTGTCTGGACCATCAGCTCTT TGATCGCCGCCTCGGCTCGGCATTACCTTCTCCAGCCGATCATAACCGAGCACAAGACGCTGGACCGTCTTGTTCTCTCCGACGCC GACGGGCAAGGCGTCCTGTCCATGAACAGAGAGCAGCTCGAGGAGCTTAGGGTGACTCCTTTGTCGGCTTCTTCGGCTTCGAAGCG GACGCTCGTGCCGGCGTTGAACATGAGGCTGTGGTATGCGCCGCAATTGGATTTGCCTGATGGTACGGTTCTGAAAGGTGCGACGT TGGTGGCTATTAGGCCGAGCGAGTCGAAGAAGGAAGTTTGTGACGCTTCTTGGTTGTCTGATGCATTTGAGGAACCGTTTGGGACG GCGGCGAGGATGTTGATCAAGAGGAGGACTTATTGTCTGGAGATGAACTCTTTTTGATTTGGGGGGGGGCACTACGACGGTTTTCA GATAGGAGAGAGCAAGCAAATCCGCATATATTGAGGCAAAGGATGAAGTAAAGAAAAGAGAAGAAACAGAAAGATCACAAAAATGT ATTTAAAATTTGTATCTAAGATTTGTATCTAAGATTTTTTATCTTTCTAATACTTATATATTTAAAATTATAATTTCGTTAAGTCT TT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002890858 F-box family protein [Arabidopsis lyrata subsp. lyrata]	1666	3e-183
NP_564350 F-box protein [Arabidopsis thaliana]	1644	1e-180
NP_193573 F-box protein [Arabidopsis thaliana]	1260	3e-136
CBI30928 unnamed protein product [Vitis vinifera]	1054	3e-112
XP_002440052 hypothetical protein SORBIDRAFT_09g025120 [Sorghum bicolor]	988	1e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q9C534 F-box protein At1g30200	1644	4e-182
O49508 F-box protein At4g18380	1345	2e-147
Q9FNK5 F-box protein At5g46170	1304	1e-142
Q9LM18 F-box protein At1g22220	388	2e-036
Q9C9S2 F-box protein At1g78100	356	9e-033

TrEMBL top hits (Blast detail)	Score	e value
C5Z0T9 Putative uncharacterized protein Sb09g025120	988	8e-105
B8ANE3 Putative uncharacterized protein	824	8e-086
Q10M69 F-box domain containing protein, expressed	818	4e-085
B9F869 Putative uncharacterized protein	746	9e-077
B9S0X7 Putative uncharacterized protein	737	1e-075

Arabidopsis top hits (Blast detail)	Score	e value
AT1G30200.2 F-box family protein	1645	3e-183
AT1G30200.1 F-box family protein	1645	3e-183
AT4G18380.1 F-box family protein	1346	1e-148
AT5G46170.1 F-box family protein	1305	7e-144
AT1G22220.1 F-box family protein	389	1e-037

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	2			20%


21	8			80%

Unigene Members	Member information