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Information for unigene UN07540

FASTA Sequence
Unigene ID: UN07540Length: 1409 SSR 
TCACTGCATAATTTTGGTAATAAACCTCAGACAATCTGCATTGACTAAAGAGTCAATTTTATGTCTTGAAATTTCACTCCAAAATC
ATTACAACAAGACAAGAAAAAGAGGTTTCTTGGTTACAAGTGAGTGTGTTGGAGATGTGATTAAGAACAACATCATTATATTACTA
CACATTTACAAGAGAGATCTCTCACCTCTTTTTCTTTTTCTTTTTTTAATTATATTTGATAATATTTCATTCATCACCACCTGCAT
ACACCGGGCTCTGTAGTTTTGCTGAGAGCTAGAATCTCATCATACTTTGAGCCATATACAAATCCCCATAGCTCCACTTCTTTAAC
ATCAAAGTCCTGAGTGTTTGCAAGACAAGCGTTCCCGTATGTCTCCGAGTAAGCACTTGATCCGCTTAGCAGCTCACTGTCTAGAT
AGAGAGCAAAGCGTCCACCACCACCGAGAGCTAGAAAATCCTTGGAGCATAAGGTGTAAAACCGGTTTGCTCCTGTTGGACGGTAT
ATAGTGGGTTGTCCAGACTTATCAGTGAAAACAAACGTACTGTTGGTTCCCTGATACTTCTTATCAGTTGGTATCAAAGGTGCCTC
CACAAGTCCACCAAAAACCGAACCTTTCCTGTCTCCAACAACCAGTAAACTGAGACCAGGCCAGAGGAGGCTTTTCCTGTACAGCG
TTGACAGTGATATACCGTGCCTCCATGTACTGTAAAGCAAAATCCATTTCCTGCCTTGAACAAGAGCAGGAAGTGAAGAATAAAGG
GAACGTCTTGACTGATCCGTTAAAAGCAAAGAAGGCTCTGAAATTTCAGGTATAACAATTGCTTGTTGTCCTATCTTTGCAGCTTC
CTCTTTGTTCTGCAACTGCTTCATCTCCAAGCCATCATCATATCCTTTAGTCTCTTCTTTATCATCATCAGTTTTATTAACAACCT
CAGGGAAGTTTGCCTTTCGATCCTTGGAGGAGAACTTAACAGCGTGGTAAAAGTTCTTAAAATGCTGTTTATACTTGGAGAACAAG
CTCTTCTTTGCACCACCAGAAACAGTAGTAATAGTTTTTCATTGTTCCAGAGGATGAGGACGATGATGATGATGATGTATCGCTTG
ATTCAGCCTCTTCTTCTTCTTCCTCTTCTTCTTCTTCCTGATCCTGGTTGGTGGTTTGTTTGTTCTTGGGGTCTGAGGATAAGAGG
GAACCAAGAAAGCAGAGAAAGAAGAAGTGTCAGGCTCGTCTACCAAATCTTTCTCAGTGATGGACTCTTCTAGTTGATCTTTCTTG
GACTCATTTTCCTCATCATCCGGAGGAGGAGGAGAGGAGGAGGGTTTATCAGAGATGGGATTAAGGAGACCGGTGGTGAGATCGCT
GACAAAGTGAACTGCTTTGCTTCTCAACGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_195697 TLD-domain containing nucleolar protein [Arabidopsis thaliana]13421e-145
AAL38841 unknown protein [Arabidopsis thaliana]13421e-145
XP_002866890 hypothetical protein ARALYDRAFT_490773 [Arabidopsis lyrata subsp. lyrata]13052e-141
XP_002531255 conserved hypothetical protein [Ricinus communis]8903e-093
XP_002310564 predicted protein [Populus trichocarpa]8804e-092

Swiss-Prot top hits (Blast detail)Scoree value
Q8N573 Oxidation resistance protein 12913e-025
A8KBE0 Oxidation resistance protein 12887e-025
Q4KMM3 Oxidation resistance protein 12861e-024
Q4V8B0 Oxidation resistance protein 12861e-024
B4F6Q9 Oxidation resistance protein 12852e-024

TrEMBL top hits (Blast detail)Scoree value
Q8GUN9 Putative uncharacterized protein At4g3987013427e-146
Q8VZ09 Putative uncharacterized protein At4g39870 (Fragment)13427e-146
B9SZ36 Putative uncharacterized protein8902e-093
B9HFG6 Predicted protein8803e-092
B9H528 Predicted protein (Fragment)8274e-086

Arabidopsis top hits (Blast detail)Scoree value
AT4G39870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05590.2); Has 2018 Blast hits to 1865 proteins in 220 species: Archae - 0; Bacteria - 39; Metazoa - 1002; Fungi - 279; Plants - 129; Viruses - 34; Other Eukaryotes - 535 (source: NCBI BLink).13461e-148
AT2G05590.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 697 Blast hits to 689 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 403; Fungi - 84; Plants - 66; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).5153e-052
AT2G05590.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39870.1); Has 522 Blast hits to 522 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 48; Plants - 62; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).3971e-038

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
201  13%
 
61  13%
 
86  75%

Unigene MembersMember information