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Information for unigene UN07547
| FASTA Sequence |
| Unigene ID: UN07547 | Length: 1421 |
SSR | | ATAAAAATTCAAATTTAAATTATTTAATTCAAAAAATAAAACATAGTCTCTATAATTTAACTGAAACATTTCAAAAAATCTTCAAT
CAAAAGTGACAGTTTTATACTCCGAAAATATTTGGACACTAATACAACGTAAAAGATCTCAATAAATCAAGAACGTATATAGACTC
AACTCACTAAACCTTTTGTGGAGACTCTAATAGAGTATCTATCTTCCTTTTCCTTTTCTTGTAGAGTGGAACTCGTCCTCCAAGCT
CTTTCAGCTGATCCACAAGCCCGTATAGAAACTCAAACGTTAATATGTTCTGAGCATTAAACTCCTCCCTAACCTGTGGATGAACC
CTAAACCAATCTCCCAGCATCTTATGCACGTGAGATCGAATCATCCTCCATGGAACCGGATGCTTCTCACACAACTTCAAATACTC
AACAACTAAATCTCCCTGGTCTAATCCTCCATCGACGTATCCCTCTTCTTTAGCCCATTCAGCTGTTCTAAACCCAGCAAAAGCCG
CAGGGTTTTCGAGAAGCGTCTCAGCGGAAAGAACACCTTCAACACCCGTCTCTCTGATGCACTCATCCACATCCTCAACGCATCTC
ACGTTCCCATTGGCTAAAACAGGGATCCTCATAGCCTTCCTCACCTCCTTGATGGCTCCCCAATCAGCTCTAAACTTTTTCCCGTC
TTTCTCATCTCTCGTCCGGCCGTGAACCGCTAGTAATGAGCAGCCGGCTTCTTCCAACATCTTGGCGTAGTTGAGTGTATCTTGAA
GGTCTGGGAATATCCGGATCTTGCAGGAGACGGGAACAATGAGGTTCTGAGCTAACTTCTCAACGAGTGACTTCACCAAAGGAAGG
TTATCCATCAGGAATGCACCATAGTTCCCTCGCTTAGCAATACGTTGAGGACACCCTAAATTGATATCAACATAATCGCAGTAAGG
TTCGACTCTCTTGGCAGCTTCCAAGAGCGTATCAGGATCATTAGCACAGAACTGCACAAACAACGGCCTGTCCTCCTTACAAGTGG
TGAACTCTTGGTTACGATACTTCTCGGTCTCGGTGAAGATCCTGGAGTGAAGCATGGGCGTGTAGGCAGCTTGAGCTCCGTATTTC
TGGCAGAGCAATCGAAAGGGAAGCTCCGAGTTATCCACCATCGGAGCCACGATGTACTTTGGTCTACCTAGTTTCTTCCAGTGTTC
CCAAGCTTTCTCCACCCTCCTATCATCAACGATGCTCAAGCTCTCCGGCTGCTGCTGCTGCTGCTGCTGCGACGGATCAGGGTTTG
TTGGATCCGTGTTTTGGGTCATTTTTTGAATTTTAGGGTCCGAAAAGATTAGGTTTCATGAGGTGACGACGGGGGAGGGAATATAT
CGCCGTCGCCCTAGATTATTAGGGGTCCCAAGCGAATCGATTCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_201523 tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] | 1710 | 2e-188 |
| XP_002865017 nitrogen regulation family protein [Arabidopsis lyrata subsp. lyrata] | 1690 | 4e-186 |
| XP_002283225 PREDICTED: hypothetical protein [Vitis vinifera] | 1488 | 1e-162 |
| XP_002533266 tRNA-dihydrouridine synthase, putative [Ricinus communis] | 1448 | 5e-158 |
| NP_001142214 hypothetical protein LOC100274382 [Zea mays] | 1425 | 2e-155 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8C2P3 tRNA-dihydrouridine synthase 1-like | 710 | 8e-074 |
| Q8K582 tRNA-dihydrouridine synthase 1-like | 710 | 8e-074 |
| Q6P1R4 tRNA-dihydrouridine synthase 1-like | 709 | 1e-073 |
| Q9HGN6 tRNA-dihydrouridine synthase 1 | 658 | 9e-068 |
| P53759 tRNA-dihydrouridine synthase 1 | 616 | 6e-063 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FH91 AT5g67220/K21H1_18 | 1710 | 1e-188 |
| B9T4U6 tRNA-dihydrouridine synthase, putative | 1448 | 3e-158 |
| B4G0K9 Putative uncharacterized protein | 1425 | 2e-155 |
| C5Z1S4 Putative uncharacterized protein Sb10g029830 | 1408 | 2e-153 |
| A2YGX9 Putative uncharacterized protein | 1390 | 2e-151 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G67220.1 nitrogen regulation family protein | 1711 | 6e-191 |
| AT3G49640.1 FAD binding / catalytic/ tRNA dihydrouridine synthase | 254 | 5e-022 |
| AT3G49640.2 FAD binding / catalytic/ tRNA dihydrouridine synthase | 254 | 5e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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