 |
Information for unigene UN07604
| FASTA Sequence |
| Unigene ID: UN07604 | Length: 2446 |
SSR | | GGCCTCGCCGAATCTCTATTCTGTCCTTTTCTTTCTCCTTCCTTCCTTCCTTCCTTCTCCATTCTTCAAAACGTTTCATCGCTTCC
ATGGAGGCTATGCTTCTCAAACCCACTTTTTACAATACGCCAATCCGCAACCTTGCCAACCCTTCTGCATCTGTCTCGTATTTTGC
CTGTAAATCGAGATTCGGACAACCTGGGACTCTCTCCCTCCGACACTCCTCCGCAGCTTCTCCGATCCGATACTCGAGGAGCCTAA
GGGTGGACGAGAGTGAGAGCTTGACACTTGACAGCATAAGACACTCTTTGATCCGTCAAGAGGACAGCATCATCTTCAACCTTCTC
GAGCGAGCTCAGTATCGCTACAACCCTGACACATACGGCGAAGATGCTTTTGCTATGGAAGGGTTTCAAGGATCTTTGGTCGAGTT
TATGGTCAGAGAGACTGAACAGCTCCACGCTAAGGTGGACAGGTACAAGAGTCCAGATGAACATCCTTTTTTCCCACAGTGCTTGC
CTGACCCAATCCTTCCCCCTATTCAATACCCACAGGTTCTGCATCACTGTGCTGATTCTATAAACATCAACAAGAAGGTGTGGAAC
ATGTATTTCAAACACCTTCTTCCCAGGCTGGTCAATCCAGGGGACGATGGTAACTGCGGTTCAGCTGCTGTCTGTGACACGATGTG
TTTGCAGATACTTTCAAAGAGAATCCACTTCGGTAAATTTGTTGCCGAGGCCAAGTTTCTTGAGAATCCAGCTACCTACGAAACTG
CCATCCGTGAACAAGACCGGACACAACTGCTGAGGCTTCTGACTTACGAAACAGTTGAAGAAGTAATCAAGAAAAGAGTTGAGATC
AAAGCCAGGATTTTCGGTCAAGACATAACAACAATCAACGATACAGAGACTGATCCTTCGTACAAAATCAACCCTAGCTTGGTTGC
TAAACTCTATGGAGAAAGAATCATGCCCCTCACTAAGGAAGTCCAAATTGAGTACTTGCTTAGGAGGCTTGATTGATTGAAACCAT
TTTTTTGTATTTTTGATCTTTTTAACTTTTATGAAACTGTAATGTGACATAAGCAGCTCAAGCTGAGTTTTATTACAGGTTTAAAC
AGAGAATTAAAAAAAAAAAACAAATGAACTAATCTGAGAATAATTAAGAAAAAATAAAATAAAAATTCTTTCTGATGTTGACAGAG
TTTTTTTTTGAGTACTCTGCAATGATCTTGTAGTAGTAGCATCAGAGTTAAGCTCCTGTGGACTCTCGGACAATCTCGTAAATAGA
TAGAATGTTTTCAAGGGTAAGTAAGAAGATAATGCACCATTCTAATAGATCTGATCTTCGGTTCTGCATCACCTCTTGTAGGAAAT
GAATGTTGTGCTCTACAAACTTTAGCTTAAAGTCTAGATTCCAAAATCTCTGAGTAACCTCGTACTCCTCTCTTAGGTACTCATAG
ATCAGCGCATATCTAGCCTCTCTCCAAGCAATCTCGGATCTATCAAAGAGACCAACTCTGAGAATGACGTCAGCTAGATTAGAATT
AGCCTTCCCAACGAGTTGGAAGAGCTTTTTCCTGTGCATTGTGAAAGTTCCGGTTTTCTCCATCGCACGGGTTATACCAGCAAACT
CTTCCACCAACTTATCAACCTGAGAAACAAAGTAATCCAACGCAATACTTTGTCCAAGCACACTCCCAATAATACGGATGCTATTA
GTATCCAAAGTTTTGAGAACAATGTAGTCAGGCCCACCTTTCATTTCCTCAGTCAACAGAGGCTTCTCCTTAACAGCATAATCGTC
TTTTCTCATTTCAGTGAGAAGGCCAGAAGCATGTCTACGAACAATGTCGAGATAAGCCTCAACGTCAGAGTCATCAACATTGAAAA
GAACAGCAGAACCGTATTGAAAGACAACCATGAACCGACAGTTGCTCACACTCTCCCTCTCGTCCAACGTAGGGATTCCGGAAGAG
GAATCAGAGAATCTGAGAGCGATGGAGTTGGTAGAGCGAGAGGTAGGAGGAACAACATTGCACAAGTTGTCAGCTTGCATCCCCTT
CAAATCAATACTAGTGCTGAGAAAATAGGCTTTGACGGGGATTTTGCCTTTGTCTTCCTCTTCCTTGGTTCCAAAGTCGTAGCTTT
GATAAACATCGCCCGACCCAGAGTCAGAGTCGTTGTTGTAAATCGAAATCGGAGAAGGGAACGCTGAGAAGAATCGGGAATTAAGA
AAGCCAGAAGCTTTATGGAAAACAATCGCCGGGCGTCTCCAAAGACATGGAGGCTTTGAGGAGGAATTGATTAATTGATTACGACG
AAGAAGAAGAGCACCGACTGCTCTCCATCTACCCATTCACAGAAAATACAATAAAAAGTTGAAAAATTTCTTGTTTGGTTTTAGGT
CACTCTCCTCCAAAGAATTCGACTTTATTAGATTGCCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888717 hypothetical protein ARALYDRAFT_476065 [Arabidopsis lyrata subsp. lyrata] | 1522 | 3e-166 |
| AAM61045 unknown [Arabidopsis thaliana] | 1514 | 2e-165 |
| NP_564963 uncharacterized protein [Arabidopsis thaliana] | 1512 | 4e-165 |
| NP_177096 chorismate mutase 3 [Arabidopsis thaliana] | 1315 | 3e-142 |
| AAD21624 chorismate mutase 3 [Arabidopsis thaliana] | 1298 | 2e-140 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42738 Chorismate mutase, chloroplastic | 814 | 1e-085 |
| O13739 Probable chorismate mutase | 483 | 3e-047 |
| P32178 Chorismate mutase | 466 | 3e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LG43 Putative uncharacterized protein | 1514 | 2e-165 |
| Q9C565 Putative uncharacterized protein F10D13.7 | 1512 | 3e-165 |
| Q9C544 At1g69370 | 1315 | 2e-142 |
| Q9XF60 Chorismate mutase 3 | 1298 | 2e-140 |
| B9HXM9 Predicted protein | 1277 | 5e-138 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G69380.1 unknown protein | 1513 | 1e-167 |
| AT1G69370.1 CM3 (chorismate mutase 3); chorismate mutase | 1316 | 7e-145 |
| AT5G13610.1 unknown protein | 829 | 2e-088 |
| AT3G29200.1 CM1 (CHORISMATE MUTASE 1); L-ascorbate peroxidase/ chorismate mutase | 814 | 1e-086 |
| AT5G10870.1 ATCM2 (chorismate mutase 2); chorismate mutase | 674 | 2e-070 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
