Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN07620

FASTA Sequence
Unigene ID: UN07620Length: 1324 SSR 
GGGACAACGAACGAAACATGGTACAATATCCAAAAAAAGCTTTTTTGGTTTTTTTTCCTGTTTATGGTTTTTGTACAAGGAACAGT
ACATGTCACAAGACAAACAAACCTAAAATAAAATTTGTATTGAAAGACGAGAAAAGAAGAGAGAGGTTCAAAACCAAGAACAACAC
TGGGCTACGAGTAGGCTGGTCTGCTTCATTTGCTTCCAAGAAGATAGAACAGGTAGAGACAGCACTGATACCCTAATTTGCATAGA
AGCGAGAACGACGCCTTCTTGAATTGTAAACCAGAGAGAACCTTTGATGCACAGCGCTACTTGTGTTAATTCCACTTGTGGTGGTG
GTGATGAACTCATCATCGATCTCATCTACTCTATACACAGGGAACTCTATCGACGCTACTGAGCTGCTGCTGTCATCAGAATTTGA
ATTATCATAGCTAGAGCGGCGACTCCCTCTCCTACTCTCATTAATCATCATCCTCGACCTTCTTCGATTCCTCCTCGCATTCCTTA
TTATCAAACACTTTATACAAAATACAAGAAGTCCACCAGCTGCTCCCTGCATTGCCAGGAACATCCTCTAACTCATCTCCAGTGCC
ATCATCATCTCCATACTCAATCACATAGTCTCCTAACACCACACCTCTCGGAACCTCAGAGTGAATCGTGCTCAGCACGTCGATAA
TCTCAGACGACTGCTGGAAATTCTCCCAGTCAAGCTTCCTCGCCGGATCAATCTTGGAAGGGCGAGAGTCCGGATGCTCTGACTTA
GCGTGTTCCCGAAGCTCGGCGTAAGTACCGGTGAACCTGCACCGGTGTTCCTCGCAGGAACGTTTCTTCTCGTCGAGAAGAACACG
AGCTTCTTCCACAACCACCCACCCGGTGACCTCTCCTCTGCAGAGTGGACACACCGGTTTGCAGTTCTCTTCCAGAACCTTAGACA
GTGTGTCACCATCAGGAGCAGGAGGGGGAGGGGAGTCTGTTGTTGTTCCACAGGCGGTGATGAAACGATCAAGGCAGTTGGAGTGG
AGGTGATCAGTGTTGCAGACGAAGGCACGGCATCCGTTTTGGTAAGAAGAGCACTGGAGGAGGACGGCGTTGTGAGGGGAGTCCAA
GCAAATGGGGCAAACTAAATCATCCCAGTTGATGATCGTCGTGGAGCAAAAGGTGGTGTTTGCTTGTTGAAGCTTCTTTTCGCAAA
CAAGTTCCATAAAGTTCCAAACTTTTATTATTATTATTATGCTCTTAGAGATCCGCAAAATGAAACCCTTTCTTCTACGTCATTTC
CTTGCTATGTCTTTTGAGATTGGCAGTTTTGAAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869327 hypothetical protein ARALYDRAFT_491599 [Arabidopsis lyrata subsp. lyrata]9915e-105
CAA16544 hypothetical protein [Arabidopsis thaliana]9852e-104
NP_567874 uncharacterized protein [Arabidopsis thaliana]9719e-103
XP_002324394 predicted protein [Populus trichocarpa]8347e-087
XP_002330810 predicted protein [Populus trichocarpa]8302e-086

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O49590 Putative uncharacterized protein AT4g314109852e-104
Q8S9L2 AT4G31410 protein9716e-103
B9ILG4 Predicted protein8345e-087
B9N6A2 Predicted protein8301e-086
B9SPP5 Putative uncharacterized protein8239e-086

Arabidopsis top hits (Blast detail)Scoree value
AT4G31410.1 unknown protein9714e-105
AT4G31410.2 unknown protein9714e-105
AT3G24740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3253e-030
AT3G24740.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G25910.1); Has 135 Blast hits to 134 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).3253e-030
AT4G08460.1 protein binding / zinc ion binding2715e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
211  25%
 
191  25%

Unigene MembersMember information