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Information for unigene UN07688
| FASTA Sequence |
| Unigene ID: UN07688 | Length: 1175 |
SSR | | GCAAGAGGTCGGGAACCGCACACGGTGATGATAAGGAAGCACCGAGGAAGCATAAGAAAACTGGAGTGAAGCATCAACATGTTGAA
GCAAGTGGCGGCAAGATAATGTACTCTTTGAACCAGATTAAGTCGATGAGGTATGCTAACATGGCGAATCAGAGGAAACTGTGGAG
TGACGTGTACGCTATGCTCCTACCTGAGCTGGTGAGTGAGTACGAAGGTCTAGTTAGCTTGAAGAAGAGTCAGAAGACTTCAAAGT
CGAGTGGCATCGGTATTCTCGGCACCAAAGAAGGAATGGATGATTTAACACTTGAAGAAGAAGAAGAAGAGGAGGAAGAGTACAGT
GAAGATAATGACGATTACAATAGTATTTTGAAACCTGCCTTTGAGGTGGAAGGAGAACCTGATTTTGAATCTGGACCACCAGAAGA
TGGCTTTGAATACTTGAGACGAGTCAGGTGGGAAGCTAAGCGTGTTCCTAATGTAAAAGTAGCCAAGATAGATGAAAGCAAGTACA
TAACGAAAGAGCAAAGTGTCTACATGCCACAGATACCTGAAATCCCCAAATGCCCAGAGCACTTATTACCACTCAAGGAATGGGAA
GACTCATTGCTTTCTGACTTCTCACATCTTCGCCTGGCTTTATCACAAACTGACAACAACTTCTTCGGTGACGAGATCATGTCATC
AAGTCCGTCTACAGAGTATATGCTTATGGGGATGTTCAGTACACGTCTCAACACGGTTACAGACGAGTCATTTGGTGTGGTGGTTT
CGGAAATACAAGGAATGGACTCGGTGACGCGGGTATCAAGGCTGAAAAAGAGGATATGTTTGGTTGAGAAGGAGAGCGGTTTACAG
GGCAGTGACTGTATATGGGTAGTAGCATTGTGTGCATCGGTGGACACTCCTTTGGATGGTGATACTTGTGCTTGTCTCAGGGCTCT
TCTGAGGAAGTGTGCGAGTGTTCGTGCGTTGGAGGTTGAAGATGAACAAGTCATCATCATGGCAAATATGCTCATCACCATCGCAG
GCAGATATTTTGGCCAAATGGAATAAGAGATGTTAGATTGTAACATCATGCTCTTGCTTTGAATCTGTCTTTGTTGAGTGAAATTA
GAAGAATAATTACTTGAGTATTTTTCCTTTTATGTATCCTATCCATATTTTAATTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564657 survival of motor neuron protein-interacting protein 1 [Arabidopsis thaliana] | 1120 | 4e-120 |
| XP_002891889 hypothetical protein ARALYDRAFT_474711 [Arabidopsis lyrata subsp. lyrata] | 1075 | 7e-115 |
| AAD25635 Hypothetical protein [Arabidopsis thaliana] | 954 | 7e-101 |
| XP_002327849 predicted protein [Populus trichocarpa] | 733 | 3e-075 |
| XP_002310453 predicted protein [Populus trichocarpa] | 618 | 7e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54KN2 Component of gems protein 2 | 173 | 1e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C5M7 Putative uncharacterized protein At1g54380 | 1120 | 3e-120 |
| Q9SLJ6 Putative uncharacterized protein F20D21.20 | 954 | 5e-101 |
| B9MXZ1 Predicted protein (Fragment) | 733 | 2e-075 |
| B9HHD5 Predicted protein (Fragment) | 618 | 5e-062 |
| B6TZU2 Survival motor neuron containing protein | 570 | 2e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G54380.1 spliceosome protein-related | 1120 | 2e-122 |
| AT2G42510.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1). | 369 | 2e-035 |
| AT2G42510.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 294 Blast hits to 263 proteins in 60 species: Archae - 2; Bacteria - 35; Metazoa - 52; Fungi - 12; Plants - 28; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). | 343 | 2e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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