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Information for unigene UN07753
| FASTA Sequence |
| Unigene ID: UN07753 | Length: 2800 |
SSR | | GGACGTTGAAATAAGATTTTCTTTTGTAGGCTTAGTTTTTCTAGTTTTCTGTTTTCTCTGGGCGATATGATAATCTCAATTCTCAA
AAGAATCAGATTACTCATTAGGCAGATCAGTCAGTCGGCTGCCTTTGAGACGCCTCGGCAAACGGTTACTAGTGGAGATGAATCTA
GTGGTTGGAAGCAAGTAGACGAAGCTCCAACAAAGCATGTTAAATTTCGTGAGCCTCCCAGCAAGATAGTTATGGACGAAGCAGAA
GGACAGTCAGATACCAAAAATCCACCATATGTCCCTGCGTTTGATGATCCTAGCACCTCAAATTCTCCTATTTTACCCCCCGTCCG
TGAAGAACCATCGTCATCTTCGGAGAGTGAAGATGATGATGATGACCCGTTACCAGGTATAGAGGATCTTCAAATATCAGGAGAAC
CTTATCCTGGACATGAGCTTCAGGCTTGTGGTTACTCCGTTAATGGAACGACAAGTTGTAACTTTGAGTGGGTGTGTCATCTTGAA
GATGGATCTGTGAATTACATTGAAGGAGCAAAGCAGCCAAATTATCTTGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGA
AGTTCAGCCTTTGGATGACAGGAACCGCAAGGGGGAGCTTGTCAAGGTTTTGCCAATGAAAATCGGAAGATAACTTGCCATCCAGA
GATGCAGAGACATATAGAGAAGAATCTTCATAGTGGTCATGCTTCATACAAAGTTTCTGTTTCGACTGGTTTCCTAGATATATGGG
AAGACACTACGCTGTCTATAAAGAGAGAAGGTTACACTATCAAGTGTAATAACGATATCATAGTTGCTGAGAAGTTCTCATCTTCT
TCTACTGCTGTAACAATTCCGTTTGGGCAGCCTGAAGAATTTGTTATAGTTGCTTCTGATGGTACTAGTGAATGTTCCTTGCGAGC
AGATAACGGATCAGCAGACCTTAGCTGCTCAAGAGATACAATAGTACTCACCCTGAGATTATTTAGCATGAGGGCTCTACAGAGAA
AGAAGGGAAAGAGGAGAGGATTTTTATTTAACAAATGAGATTTTTTTGTATATAATTATTATTTTGAGCTCTGTCTTCTAACAGCT
TTATATATATTGAGCAAAAAGATTGCACCCCTTTGTTTTGTAGCCTTGTCAATCAATTTGTTCATGAGATAAAACAATATTTGTCC
CTTGTTTATATAATGAAAATCCAACTAATATTACATTTGATCACCTCCAAATATCACTGCTCTGCAGGCACATTACATTCTATTTT
GTCCACCTGTTTGATCACACTAAACAATTAGCCACAGCGGCTTTGTTACGAAGATGAATAGTAAAGTTTTAAGGTGATATGATACA
ACAACAATGAAGTTACATATAAGTAAACATATATTCAGCTGTGTCTGAATTTAGGCCGCACAGTGATAACACCTGGTCTTGTCTCA
TCAAACCTGTACCTGTTATCTTCAAAGAAAGTCTTCACAGCTAGAGGAAGTGAAGCATGTCCGCGACTGTGTTTACCAATACCTGT
TACAACCTGCAATGAGTTCCTTAGCTCTCTAGAAGAAGCTCTTTGACGGTCCAGGCCTTCCACATCTAATCTACCACAAGGCTCTT
GTGACGGAGATCGCAGAGCTGCGTTCTTTGACCTACCTCTATTTGGTGATACCGAACGGTTCACTGTGAACTGACGTTCGATCCTT
TGCAAACGTTCTTGTAACACTAGAACAGCTTCTGCTGCGTGGAGACCATGCAGGTCCAACTTCCATATGTCGTTATTCCTGTTTGT
TATGCCTAAGATCTTATTGGCTGCCTCAGCATTCAGTTTCTCAGCTGTTGACCAATCCTCTCTTGCTTTCTCTGAATGCTGCTTCG
CAGAAACATGGTCATTTCTCATAAAAGCATTTTGGGCAGCTCTAGAATGGTTTGAGGCGGATCTCATCATTTTTAAAGCATCCTTT
CGATGAGTCAAGTAGAGGTCGTCTTCTTCCCATTCAGGTGCTATAGGAATGGCCTGAAGCCGCTGAATGATACTACCTAAGTCAGA
AACATCATCATCAGGTAGCTTTTCACTCTCATATGCATTCACCAGAAACGAACTTCCACCATTCTCACATGTAGACCTTGCAGCTA
TATTCACCGAACTTGTAACAGTCCTCCCAGATATTCTATGTTCGGATTGTCTATTAGTTGGAACCTCAGCTTCCTCGTAAGCCATT
CCTTGCAAAAAAGCTAAGGCCATCTCAAAATTATCTTCTGTAGATAACAATATATCCCTTATCAAGCTATCATCAGCCCAGCTATT
CATCTCCTTCAGCTTGCTGAAGGCCGACGAATCATGATGACTAGTTGGAGTCAACAAAGGGCTAGGTTTGCTTCTCCAATCCTTAC
TCTCTGTCAGTGCTGGAAACTTCGGAGGAGGTAAGAGGACGGAAGAGAAAGACTTTTCAGAAGATTCGTGGTTTCTCCTGACCAGC
TTTCCTCTTATTACATCTAAGTGTGGTGGATTAACACTAGTTGAAACAGGCGGGAATGGATCATCATCCTTAATCTCGCTTTGGAG
ACCTTGTTGTCTTTGTCTCTGCTTGAGATCAAAGGCAGTCCAACCAGATGATTTGCCTTTCATCCATGACATCTTTTGTATTGTAT
TATTATTATTATTATCTCCCGCAGTAACTGATCAATCTCTCTCCCTTTCCATTACATTGATACTTCAAAGGTCTTTCCCCGAGGTC
AAATAAACTACGGCAAATGAAATCGAGAGCAGTTCGGTTTGAATGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197743 smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] | 1014 | 2e-107 |
| XP_002874133 hypothetical protein ARALYDRAFT_910364 [Arabidopsis lyrata subsp. lyrata] | 996 | 3e-105 |
| ABN05922 Smr protein/MutS2 C-terminal [Medicago truncatula] | 801 | 1e-082 |
| XP_002267329 PREDICTED: hypothetical protein [Vitis vinifera] | 712 | 3e-072 |
| NP_197740 uncharacterized protein [Arabidopsis thaliana] | 705 | 2e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q08954 Smr domain-containing protein YPL199C | 127 | 7e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LT11 Genomic DNA, chromosome 5, P1 clone:MQM1 | 1014 | 2e-107 |
| A2Q1V5 Smr protein/MutS2 C-terminal | 801 | 8e-083 |
| B9IP21 Predicted protein | 685 | 2e-069 |
| Q9LT13 Gb|AAF01580.1 | 631 | 4e-063 |
| B9RWA8 ATP binding protein, putative | 568 | 9e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23520.1 LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); Has 91 Blast hits to 91 proteins in 45 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 45; Plants - 27; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | 1015 | 7e-110 |
| AT5G23490.1 unknown protein | 705 | 6e-074 |
| AT5G08440.1 unknown protein | 556 | 1e-056 |
| AT5G23510.1 unknown protein | 466 | 3e-046 |
| AT5G23510.2 unknown protein | 466 | 3e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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