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Information for unigene UN07772

FASTA Sequence
Unigene ID: UN07772Length: 1434 SSR 
GGAAGGGATATCTGTTGACGGCGTCGTCTTACTTGTCATGGTCGACGGAGTTTGACATATACTAAAAAGATGGGAGGAGGGAATTC
TAAAGAAGATTGGAGGCAAGAGCCGCCATCGTCATCATCAACAACAACAACAACATGGGCTTCTCATCAAAGTTATCCTCAGTCTG
GACCTGGCAGCTACAACTATCCTCCTCCACCCTCTTTTTCTCCATCTCCTGCTCCCAGTTTTGGTGCTCAGCCGCCTCCTCCTCCT
TATACTCAAGAGGAAGGCTATGCTTATCCTTATCCTCCCACACACCCTCCTCATCCTCCTACTGATACGAAGAAGTTTGATCGCAG
GTATTCCAAAATATCCGATAACTACGCCTCTTTACATCAGGTGTCAGAGGCTCTAGGACGTGCAGGTCTTGAATCCTCTAATCTTA
TCCTCGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGCGCCAAGTCCTTTAATAAGAAAAGCTTGCATCATATCAGCACCTAT
ACTCCCAATCCTTACGAGCAAGCTATCACTATCATTGGACGAACCTTAGCCTCCTTTGACGACGATAACTTAATCCCTTGTTTTGG
TTTTGGTGACGCATCAACTCATGATCAAGACGTGTTTAGTTTCTATCCAGAGGGTCGATCCTCTAATGGATTTGAGCAAGTTTTGG
CTCGCTACAGAGATATTGTCCCTCACCTTAAGCTCGCAGGACCAACATCTTTTGCTCCCATCATTGAAATGGCGATGACAGTTGTT
GAGCAGAGTAGTGGCCAATACCATGTGTTAGTGATCATAGCCGATGGACAGGTAACAAGAAGTGTGGATACGGAACATGCACAGTT
AAGTCCCCAGGAACAGAGGACTGTTGATGCAATTGTGAAAGCAAGGTTTGTGTGAATAATATCTACTACTACTACTTTGCGAAGAA
ATGGGAGTATCCCAGAGAGAATCCCACTTCCACCTCCGGCGGTACTGCAGAGTGGAGCAACATTCTTCAAGCCGTCACCAATACAG
AGTTATGAACCGAGTGTACCTACTTTTCCGATGGAGAGCAAGAATATGACCAGCAGTATGGACGACAACCAGCTATGCCCGATATG
TCTGAGCAATCCTAAAAACATGGCCTTTGGTTGCGGCCATCAGACATGTTGTGAATGCGGTCCAGGCCTTAAGGTGTGTCCTATTT
GCCGTGCACCCATCCACACCAGAATTAAGCTCTACTAAATGCACCAACTCTAGGCTCCATCCTCTTCAAATATATATTTCACAACT
TTCTTGTTAAAAAAAAAACAAAATGTTCTTTTGTTCTTTGATTGAATTCAGAAACTTAGCTGTTCTGTTGTCTCTTTAGCTACTTT
GCTTGGGTCGCAAGTTTGATTTTCTGTTGATTGATTGATTGATCTGTCGAAAGATGCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]9862e-104
BAH19894 AT5G14420 [Arabidopsis thaliana]9801e-103
XP_002873665 hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata]9801e-103
NP_186814 E3 ubiquitin-protein ligase RGLG1 [Arabidopsis thaliana]9711e-102
XP_002884269 hypothetical protein ARALYDRAFT_896079 [Arabidopsis lyrata subsp. lyrata]9593e-101

Swiss-Prot top hits (Blast detail)Scoree value
Q9LY87 E3 ubiquitin-protein ligase RGLG29868e-106
Q9SS90 E3 ubiquitin-protein ligase RGLG19714e-104
Q09221 Copine domain-containing protein 23731e-034
Q6GNY1 E3 ubiquitin-protein ligase mib11453e-008
Q804S5 E3 ubiquitin-protein ligase mib11444e-008

TrEMBL top hits (Blast detail)Scoree value
B9DGM7 AT5G14420 protein9807e-104
Q08ET6 RING-finger protein8427e-088
B9HLE0 Predicted protein8221e-085
B9RAR5 Copine, putative8132e-084
B9GIK6 Predicted protein (Fragment)8061e-083

Arabidopsis top hits (Blast detail)Scoree value
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase9867e-107
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase9867e-107
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase9867e-107
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase9867e-107
AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding9714e-105

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
211  25%
 
181  25%

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