RadishBase

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Information for unigene UN07794

FASTA Sequence

Unigene ID: UN07794	Length: 1571	SSR
GGTGGTCATTACATTTCTTATGTCAAAGGTTTGAGAGGCAACTGGTTCAGAATCGATGATTCCGAGATTCATCAAGTGCCAATGAC TCAAGTTATGTCAGAAGGAGCTTACATGTTGTTCTACATGAGATCGTACCCGCGTCCTCAAAGAGGAGAACACAACGTGAAACCTC AGGCTCGGCATTCGCTGCAACCAAGAAACGAGACTAAGGAGCAGCAGAGGAAACCGGTAAACCGATTCAAACCGAGAGCGGACTAC TACAACAAGAACTTAGCAGAGCCATCATCATCATCAAGCGAATGGTCTCTCTTTACGAGCTCAGACGAAGCAGCTTCGTTCACCAC GGAATCAACCAGAGACTCTTTCAGCACAGTTGACTACGCAGACGGCTGCCACGTACTAGACTCTCCTTTCTCCATCTTCAACAACT TATACCACAACAACAACAACAACGTGGAGCCGTCGCCGCACAACACCGTCGCCTGCAGAATGTTCTCGGGTACCAAACCCGAGACC CGGTATTTCGTGGAGGAGGAAGAAACAAATCACAACAACAACACGGTGGTGATGGAGGACACATCATCATCCCACGGCTATTACCA GCAGCAACAGAGTATGTATGTAGTAGATTATGAGACTAACCACTATCAGGATCATCAAACTTACGGTTATGAACAAAACTGGTAGT TTAGAATAAGAGATTGATTCTGTCTTTTAATCTCTCTCTTTTTGGGGATACTTAACTCGAGTTCCCTAACCGAAAACATTTTGTTC TTTTCATGATATAATCAACAACCTCTTGTCTGATTATTATTTATTACATATTAAAAAGAAAAAAGAGTTCACTTTTTTAATAATCA TTCCATTTGAAAGGGTAACCAAATCTCATTGACACGACCGGTGAACTCGAACGGAGAGTTATACTGAGCAACCGTGTAAGCCGAAT CGGCCCCAACTCCACCGTCTTCTTTGCTTTTCTCTATCGCGTTAGCCCAAGCCGTGCCTTGGAGGCTAGCAGACAGCGCCGCGGCT TCCTCTCCGACGGTAGAGTCGGAGACGAAGCCACTGAACTGTCTCACGGCCACGTACCTAGGCGTCCATTTCTGGATGTGGAGATT CTCGGCGGGAGCTGGATCGGGCTGGTTCTTTTTGGGGACGTAGAAGGAGACACTGAAGGAAGATTCGCAGAAAGGACCGTCGCTCG GTGAGACTTGGCTGATCACCGGAGCTGTCATCTCAATCTTCTGATGATACTCGTTCTTCCCTTGTATGTAATTAAACAACTGGAAG AAAGCTGTTCTTGTGGCATCGACTAGAGAGATGTCTTGAATCGGTTCGGTGGAGATCCAGACAGTTGTATCGTACCGGCGAATCTC GTACCCGTTTCCCGCGTGGACCAACTCGTAGTTTGGGCACTCGATTCTGTTACACGAAGGCGGGAACTTCCCGACATGACCCGGTT CGGATGTTGGGATCAGTAGGTCTGAACCGCCGGTGAGGAGGCTGAGGAGGAAAGAGAGCTTAAGGAACCTTAAACCGGCTAGTTCC ATGGCGGCTTTCGAGGTGTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002890203 soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]	1064	2e-113
BAJ33660 unnamed protein product [Thellungiella halophila]	1062	3e-113
NP_173153 SOUL heme-binding protein [Arabidopsis thaliana]	1036	3e-110
CAN68405 hypothetical protein VITISV_035042 [Vitis vinifera]	800	8e-083
XP_002266519 PREDICTED: hypothetical protein [Vitis vinifera]	800	8e-083

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FPS9 Ubiquitin carboxyl-terminal hydrolase 15	775	3e-081
Q9Y5Z4 Heme-binding protein 2	226	1e-017
Q9WU63 Heme-binding protein 2	225	2e-017
Q9FKP5 Ubiquitin carboxyl-terminal hydrolase 17	198	2e-014
Q9SJA1 Ubiquitin carboxyl-terminal hydrolase 19	165	1e-010

TrEMBL top hits (Blast detail)	Score	e value
Q9SHG8 At1g17100	1036	2e-110
A5BXB9 Putative uncharacterized protein	800	5e-083
A9PHD8 Predicted protein	746	1e-076
C6TFW8 Putative uncharacterized protein (Fragment)	740	5e-076
C6SXH8 Putative uncharacterized protein	738	8e-076

Arabidopsis top hits (Blast detail)	Score	e value
AT1G17100.1 SOUL heme-binding family protein	1036	1e-112
AT1G17110.1 UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease	775	2e-082
AT1G78450.1 SOUL heme-binding family protein	649	1e-067
AT1G78460.1 SOUL heme-binding family protein	470	5e-047
AT5G65450.1 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17); cysteine-type endopeptidase/ ubiquitin thiolesterase/ zinc ion binding	198	2e-015

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			50%


6	2			50%

Unigene Members	Member information