RadishBase

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Information for unigene UN07846

FASTA Sequence

Unigene ID: UN07846	Length: 1408	SSR
TCGAAGTGCTCTCTCTCCTCTGCTTCTTCTTCTTCGTCGTCGTCCCTTTCGTTATCTGCTTCAGAAACCCTAATCTTCAATCCCTA AAGTTGTGATTTCTGAGATTATTATGGCCAAAGCTACAAGGAGGACAAGACGCAGGAGGGTACACTCGTCGCGGCGGATGATCAGA GCAAGACCTTACAAGTCCCAACCTTCTAATCGTCTTCTTGTGAAAAGAAACGTGTTTCCAGAAGACTGTTCTAAATGTGTAGAGAA GAGGGACAGCTGGGAGAACGTTATATGCTCGGTCTGCATGGAGTGTCCACACAACGCAGTGCTTCTCCTCTGCTCATCTCACGACA AGGGATGCCGTCCTTACATGTGCGGCACCAGCTTCCGGTACTCCAACTGCTTGGATCAGTACAAGAAAGCGTCAGCTAAGCTTGGG AACCTCACCTGCCCGCTCTGTAGAGGGCAGGTGAAAGGCTGGACGGTCGTGCAGACCGCGCGTGACCATTTGAATCTCAAGAAGAG GATATGCATGCAGGAGGAGTGTGTTTTCGCTGGGACCTTCGGGGAGCTGAGGAAACACATGAGAGTGGAGCATCCCTGTGCGAGGC CGCCGCGCGAGGTTGATCCTGAGGTGGAGCAGAACTGGAGGAGGCTTGAGATCGAGCATGACAGGGATGATGTTTTCAGCACGATT AGGTCGTTGATACCCGGCGCGACGGTGTTTGGGGATTACGTTATGGAAAGGAACGATGACGATGATGATGGAGGCAACGGTTCTGA CTCAGACGAGGGTGGTGGTGGTGGTGATCATTACAACGGTTCAGGGATGATGGATGCTGGGTTTGGTAGGAATTTTTTAAATGTTA TCCTTATGATGCATGCTGTTGGGGCGTCGAGGAGTCAGACAAGACGCTCTGATTCTGATTCGAGCGACTTGACGACGACGATCAAC CGTGGAACAACAAATGAGATGACTTTCTCTGGAGAAGAGGAAGAGGATGATAGACAGAGTACCTTTCTGGCAAGTCAAATGAGGCG ACAAGGACGGGTTCTACTAGGACGATCGGGTAGGAGACGTAGAGATAGAGAAGCTAACCAGAGACCAGGTCCCCCTCCTAGATAAG AAGAGATATCACTAAGTTTGGTTTTGGGTTTCAGGTAAGTTCAAGAAAGCAATTGACCTGTGAACCCTTTTTTTCCGCTGAATTTG ACTCAGATTTGCTTCTGGTTGTCAAAGAAGCAGGTCTGTGTTTACGCATTTTAGTGTATCCTGATGTAACTTTTCTTGTCAAAGTT TTACATATGTGAATAAGCATGGTGATTAGTGATGCTCAGTGATCACACTATTCTGCAATCATGAACAATTGGATACTCGTTTTTGT TTATAAGTTTTATATCCCCTTTTACTAAGGAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CBI23881 unnamed protein product [Vitis vinifera]	700	3e-071
CBI19080 unnamed protein product [Vitis vinifera]	630	4e-063
XP_002528624 conserved hypothetical protein [Ricinus communis]	558	8e-055
XP_002980992 hypothetical protein SELMODRAFT_57817 [Selaginella moellendorffii]	555	2e-054
NP_001031250 uncharacterized protein [Arabidopsis thaliana]	525	5e-051

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
B9SRK5 Putative uncharacterized protein	558	5e-055
Q2V4E1 Putative uncharacterized protein At1g68140.2	525	4e-051
Q9C9X8 Putative uncharacterized protein At1g68140	525	4e-051
Q2Z1Y7 Pm27 protein	512	1e-049
C6TMF6 Putative uncharacterized protein	455	5e-043

Arabidopsis top hits (Blast detail)	Score	e value
AT4G08460.1 protein binding / zinc ion binding	556	5e-057
AT4G08460.2 protein binding / zinc ion binding	556	5e-057
AT1G77770.1 protein binding / zinc ion binding	529	7e-054
AT1G77770.2 protein binding / zinc ion binding	529	7e-054
AT1G68140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT4G08460.2); Has 145 Blast hits to 136 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	525	2e-053

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	2			50%


10	2			50%

Unigene Members	Member information