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Information for unigene UN07949
| FASTA Sequence |
| Unigene ID: UN07949 | Length: 1081 |
SSR | | GGGAAGGAAGAAGCTTTGATCTCTGCGGTGGTTTAGAAAGAGAGAGAGAGAAAGAAAGGAGGCACGATTCATCCAAAAGCTTTCAT
CTTTTTCCCTTGAAAACTCTATCATGTGCGGAAAGAACCATAACTGATAAAATCGCCATGGGAGATGATTCCGCGCGCGTTTCTGT
TCACAGATCTCTCGGTGGTGCTTCAGTTGCTGATTTGCTGTTATGGAGAAACCGGACTGGTGCATTCATCTTGTTAGCTTCTTCCA
CTTTGTTTTGGTTTCTGTTTGAGAGAGCTGGTTACAACCTCTTGTCTTTCGTCTCCAATGTTCTCCTTCTCCTTGTTGCCATCCTT
TTCTTATGGGCCAAGTCTGCTTCACTTCTCAACCGACCTTTACCACCAGTTCCCAATATGGAGATCCCTGAGGAGTTTGCAGTCAA
GGCTGCCGATGATATTAGGGTTTTGATCAATCGTGTACTCTCAATTGCAAGTGATATCACCATTGCTAGAAATCCCATTCGTCTCC
TTCAGATGTCACTGGTCTTGTGGGCTGTATCCTATGTGGGGACGTTAATCAACTCCCTCACTCTTGTCTACGTTGGGATTCTTTTC
AGTCTTTCTCTTCCTCTTGTGTACGAGAAGTACCAAGACCACATTAACGAGAAACTGAACTCGACTTCTAAAGTCATTCGAAGTCT
CTCAAAGAAGTTTCCAATGATGATGCCCGTAAGCAAAGAAAAGAAGTATCAGTAGGTAGTGCAACCGATTTGTTCACAAGACTTAA
GTAACACACAAGGAAGATCCCCCATTACCTGACTGCTTTCTCTAAGAAGATGATCAAGCAGCGGAAAAAAAAAGTGAATCGCAGTA
CAGTTTTTTTTTGTTCATTTCTTTCTGATCTATAGCATGCTAGTTTTTTTTTCTTTTCTTCTATATTTGTCCTGTTCTATATTCAT
GAGTTCCTGGGGTTGTTTTCTTTTGGCATCATCTCGTCTTTTAGTTTACACTTTACACAGTAATGCTTTGTGGGATTGTTGCTGCA
GTAGAATCAAGAAAGATAAAACTAAATACAATTTGAGTGGTTTTTGTTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883184 predicted protein [Arabidopsis lyrata subsp. lyrata] | 817 | 5e-085 |
| NP_566635 reticulon-like protein B11 [Arabidopsis thaliana] | 814 | 1e-084 |
| AAM65155 unknown [Arabidopsis thaliana] | 809 | 4e-084 |
| XP_002285375 PREDICTED: similar to reticulon family protein (RTNLB11) [Vitis vinifera] | 602 | 4e-060 |
| XP_002518680 Reticulon-3, putative [Ricinus communis] | 543 | 3e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LT71 Reticulon-like protein B11 | 814 | 5e-086 |
| Q6NPD8 Reticulon-like protein B10 | 515 | 2e-051 |
| Q9M392 Reticulon-like protein B12 | 334 | 2e-030 |
| Q9SH59 Reticulon-like protein B3 | 309 | 2e-027 |
| O82352 Reticulon-like protein B5 | 297 | 4e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RY96 Reticulon-3, putative | 543 | 2e-053 |
| C6T327 Putative uncharacterized protein (Fragment) | 533 | 3e-052 |
| B9HS57 Predicted protein | 524 | 3e-051 |
| C6T590 Putative uncharacterized protein (Fragment) | 520 | 1e-050 |
| B9GHE2 Predicted protein | 515 | 4e-050 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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