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Information for unigene UN07972

FASTA Sequence
Unigene ID: UN07972Length: 1379 SSR 
GATTGTGAAAATGAATTATATTCTATGCACAAAACATTACTCAGTAAATGTTAAAAGTTATTGTGCAACCAAGTATTGCTGCAAGT
GGTTGTTTCTCTTCTTGTTCTTGAGTTTCCTGAAAGCAGAGGACTCGATCTGCCTCACTCTCTCTCGGCTAATACCCATGGTCTCG
CCGATCTCTTGCAACGTCTTCATCCTCCCATCTTCCATCCCGAATCTCCAACGTATCACCTGCTTCTCCCTTGTGCTCAATGAGTC
CAACACTTTGTCTAAGTCCTCTCTCATGAACTGCTTTATCAGTATATCCTCTGAAGTTTCTGCTTCAGGGTCTGATATCACTTCCG
AGGGTTTGAGGTTTAGATTGATTCCGATCTTCTGGTCTAACGACCTAGGAGGCTTAGGGGCGAGTAGAACCGCCATGAGCCTTTTC
ATCGACAGTCCTGTCGCCTCTGCAACTTCTTCGTTCTTTGGTTGCTGGCCTGTTTCACTGTACAGTTGCTTTCTTGCCTCTTTCAC
ACGGTATGTTGCTTCCACCATGTGAAAAGGCAGTCTTATCATTCTGGACTGATCAGAGAGAGACTTCCGCACTGCTTGCTTGATCC
ACCAATGTGCATAAGTTGAGAATTTAAAACCCTTTGTAGCATCAAACTTCTCTGCTCCTCTCACAAGCCCTCTGCATCCTTCCTGG
ACAAGATCTTGGAGGTTCATCCCAGCTCCTTGATAGTTCTTGGCAATGGAAATGACGAGACGAATGTTGCTTTTAATCATTCTGTC
CTTGCATTGTGTGCCGTGAGTTATACGTTTCCTTAGAGTCTTCTGATCAACTCCAGCAGCAGAAGCCCACTGTCCAAAGGTTGGCT
GATGGCCACAACGCTCAGTCAGCTCTGCTTGAAGTCTTTCCAGCTTCAGAAGGTCCTGTATTCCTTCAGACAGCTCTGTTTCTTCT
CTGGCAGTGAGTAGCTTAGAACTGCTTGTTGTCATTCTTAGATAACGCAAAGGATCGTTATGGTCAATCTCCTGTGAAGCGACACG
TTTCTTTCTAGAGCTCGAACCAGTAGTCTTCACAGACTGCTGCATAGATGAAGCAGTTTTCTCTAGCCCTTTTGCTCTCCGAGCTT
TCCTTTCGGTTTGGCGTGTAGATCTCACAGCTGAACTCACCGAAAGCTCCTCCTCCTCCTCAAGAGGCTCAGCTTCTTGCTTTTCT
TCTGATTCTAAATCATCAGACGACTCTTTATTACAGTCAGGTGGGCACTTGAACTGAAGAAAAAGACAAGAAGACATGCTCTTTTC
CGGCTAAGCTCGAAAGCTATGTCTGACCATTGGAAGCCGTTAAGATTGCAGAGAGGAGAGAGAGGAAGGTTTGAGAAAACTGGTGA
TCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB83106 sigma factor 2 [Sinapis alba]18161e-200
XP_002889701 hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]17201e-189
NP_172330 RNApolymerase sigma subunit 2 [Arabidopsis thaliana]17066e-188
BAC43527 putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana]16977e-187
AAB69385 sigma factor 2 [Arabidopsis thaliana]16896e-186

Swiss-Prot top hits (Blast detail)Scoree value
P26683 RNA polymerase sigma factor rpoD7205e-075
P38023 RNA polymerase sigma factor rpoD17116e-074
P33118 RNA polymerase sigma factor sigB5512e-055
P77994 RNA polymerase sigma factor rpoD5468e-055
P0A603 RNA polymerase sigma factor rpoD5422e-054

TrEMBL top hits (Blast detail)Scoree value
Q9MTH3 Sigma factor 218167e-201
O22056 At1g0854017064e-188
Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG116975e-187
O22455 Sigma factor 216894e-186
B9SDA3 RNA polymerase sigma factor rpoD1, putative14762e-161

Arabidopsis top hits (Blast detail)Scoree value
AT1G08540.1 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor17062e-190
AT2G36990.1 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor6498e-068
AT3G53920.1 SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor5342e-054
AT5G13730.1 SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor4858e-049
AT1G64860.1 SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor4364e-043

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  20%
 
62  40%
 
122  40%

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