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Information for unigene UN07992

FASTA Sequence
Unigene ID: UN07992Length: 1417 SSR 
ATATAATAATGCACACGAAATTTTATTTTTACATATACTTTGAAATGATGTAGCAGTGGAATGATTCAAATGAAGGCTTCAGAGTT
TAAAGAAATAAGAAGTTACATGAATCAGAACGAGATTACATTTCATAAACACCATTATTAAGATTGTTATTACCCACTGGTCAATG
ATAATCTCTGCTAGCCATCAAAACTTTGAAAAATAAAGAATAAACTTAATGACCAAAACAAATTAATTGAAGTGTCTCGTCAAAAA
CGTTAGAACGTTATCAGCTCGCAGATAGATAGGCAATGATGCATAGAGAGAGAGAGCATTTGCCCCAAGTCCACACGACCATGCCA
TAGTTTCACTGTCCGAATCAGAGAAAAAAAAAGGAAATCATCTCTCGTGTAAAAATCTTTATTGTCCAGTCTTGGCTCGCTTGGTG
TTGAAAGGGGACATGCTCGGACTCAGACAAGGGCTCAAACTCGGACTTGGACTCTCTTCCCTTAGAGTACCATTCAGAGCCGCTAA
CTCCTTCAGCTGTTCCCTCTTGTAGTGATCCACTGATTCGTCCATTGGCTTTAGGAGAGACTCAAGGAAATGCACTGCATGCTCCA
ATCGAGAGTTGATTATGTCCTCTGGAAGCTCGGCTTCGATCAGTAAATGTAGTGGCTCGCTGAGATGCTCGTAACCTGGCTTACCT
TTGAGTTTCTCCTCCTTGACAGTATCCTTGACAGAGCCTCGTCCTCTAATAAAGACCCTACACTGTGTTGCCAGCTCGACTCTTTT
TAGAGAGTTCCCACGTGGCCCGAGAATCCGCCCAACGAAATTGAAGGTTGGAAATTGATCGACAGGCACATCAAGCCTAATGACTC
TTTTCACAATGGGTGGAGAATGGAGTCCCCAGCCTACTGGAGCAGGAGGAGCACGAAATGGGGAAGCTCTCTGGTGATGAAAATTC
TCCTCTGCTTCCATCATTGACCATCCGTCAAAATCAAGCTTTCCATTTGTCGGGGGCAGACCAGGCGATCTAAATGGACTGCCAGG
CTCATACCTATCAACATCTGATAAACAGGAGACCCTCCGAATTTCTTGATTGAGTAGTCTGCAGCAATGTGGCATAAGTTGAGAGA
AAGGACCCAACTTTTGTCTCTCTTGCAACAATTCAGCCAAGTACCTCTCACGACCAGTGGGAGGAGGAGGAGGACAAGGGGATAAC
CGATTGGGAGAAGCACTGAATCCAGGAAGAGGAAACTGGAAGAAGCTTCCCGGAAGGATCCTCTCTTCCATCGCCGCCAAACCAGC
TCCAGATTCCATCATATCGGAGATAGTGAAGAGAAGATGCGGCGGACAATCTGGCGCCGATCTGAAGGTACCGAAACCTATGTCTT
CTCCGTGTGAAGAAGGTGTGGACTGTGAAGAGTGGCCACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892515 hypothetical protein ARALYDRAFT_471067 [Arabidopsis lyrata subsp. lyrata]13024e-141
NP_172437 RNA-binding KH domain-containing protein [Arabidopsis thaliana]12712e-137
AAL31922 At1g09660/F21M12_5 [Arabidopsis thaliana]12675e-137
NP_973800 RNA-binding KH domain-containing protein [Arabidopsis thaliana]10273e-109
XP_002328717 predicted protein [Populus trichocarpa]9315e-098

Swiss-Prot top hits (Blast detail)Scoree value
Q8GWR3 KH domain-containing protein At1g0966012717e-139
Q0WLR1 KH domain-containing protein At4g264756248e-064
Q9FKT4 KH domain-containing protein At5g561406193e-063
Q8GYR4 KH domain-containing protein At3g086206141e-062
Q9ZVI3 KH domain-containing protein At2g386105996e-061

TrEMBL top hits (Blast detail)Scoree value
B9N0F3 Predicted protein9313e-098
A9PGS1 Predicted protein9125e-096
B9SKB5 Nucleic acid binding protein, putative9072e-095
B8AYB7 Putative uncharacterized protein8311e-086
Q60DW1 Os05g0419500 protein8311e-086

Arabidopsis top hits (Blast detail)Scoree value
AT1G09660.1 KH domain-containing quaking protein, putative12814e-141
AT1G09660.2 KH domain-containing quaking protein, putative10379e-113
AT4G26480.1 KH domain-containing protein6292e-065
AT3G08620.1 KH domain-containing protein6247e-065
AT5G56140.1 KH domain-containing protein6193e-064

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
112  50%

Unigene MembersMember information