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Information for unigene UN07992
| FASTA Sequence |
| Unigene ID: UN07992 | Length: 1417 |
SSR | | ATATAATAATGCACACGAAATTTTATTTTTACATATACTTTGAAATGATGTAGCAGTGGAATGATTCAAATGAAGGCTTCAGAGTT
TAAAGAAATAAGAAGTTACATGAATCAGAACGAGATTACATTTCATAAACACCATTATTAAGATTGTTATTACCCACTGGTCAATG
ATAATCTCTGCTAGCCATCAAAACTTTGAAAAATAAAGAATAAACTTAATGACCAAAACAAATTAATTGAAGTGTCTCGTCAAAAA
CGTTAGAACGTTATCAGCTCGCAGATAGATAGGCAATGATGCATAGAGAGAGAGAGCATTTGCCCCAAGTCCACACGACCATGCCA
TAGTTTCACTGTCCGAATCAGAGAAAAAAAAAGGAAATCATCTCTCGTGTAAAAATCTTTATTGTCCAGTCTTGGCTCGCTTGGTG
TTGAAAGGGGACATGCTCGGACTCAGACAAGGGCTCAAACTCGGACTTGGACTCTCTTCCCTTAGAGTACCATTCAGAGCCGCTAA
CTCCTTCAGCTGTTCCCTCTTGTAGTGATCCACTGATTCGTCCATTGGCTTTAGGAGAGACTCAAGGAAATGCACTGCATGCTCCA
ATCGAGAGTTGATTATGTCCTCTGGAAGCTCGGCTTCGATCAGTAAATGTAGTGGCTCGCTGAGATGCTCGTAACCTGGCTTACCT
TTGAGTTTCTCCTCCTTGACAGTATCCTTGACAGAGCCTCGTCCTCTAATAAAGACCCTACACTGTGTTGCCAGCTCGACTCTTTT
TAGAGAGTTCCCACGTGGCCCGAGAATCCGCCCAACGAAATTGAAGGTTGGAAATTGATCGACAGGCACATCAAGCCTAATGACTC
TTTTCACAATGGGTGGAGAATGGAGTCCCCAGCCTACTGGAGCAGGAGGAGCACGAAATGGGGAAGCTCTCTGGTGATGAAAATTC
TCCTCTGCTTCCATCATTGACCATCCGTCAAAATCAAGCTTTCCATTTGTCGGGGGCAGACCAGGCGATCTAAATGGACTGCCAGG
CTCATACCTATCAACATCTGATAAACAGGAGACCCTCCGAATTTCTTGATTGAGTAGTCTGCAGCAATGTGGCATAAGTTGAGAGA
AAGGACCCAACTTTTGTCTCTCTTGCAACAATTCAGCCAAGTACCTCTCACGACCAGTGGGAGGAGGAGGAGGACAAGGGGATAAC
CGATTGGGAGAAGCACTGAATCCAGGAAGAGGAAACTGGAAGAAGCTTCCCGGAAGGATCCTCTCTTCCATCGCCGCCAAACCAGC
TCCAGATTCCATCATATCGGAGATAGTGAAGAGAAGATGCGGCGGACAATCTGGCGCCGATCTGAAGGTACCGAAACCTATGTCTT
CTCCGTGTGAAGAAGGTGTGGACTGTGAAGAGTGGCCACCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892515 hypothetical protein ARALYDRAFT_471067 [Arabidopsis lyrata subsp. lyrata] | 1302 | 4e-141 |
| NP_172437 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 1271 | 2e-137 |
| AAL31922 At1g09660/F21M12_5 [Arabidopsis thaliana] | 1267 | 5e-137 |
| NP_973800 RNA-binding KH domain-containing protein [Arabidopsis thaliana] | 1027 | 3e-109 |
| XP_002328717 predicted protein [Populus trichocarpa] | 931 | 5e-098 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GWR3 KH domain-containing protein At1g09660 | 1271 | 7e-139 |
| Q0WLR1 KH domain-containing protein At4g26475 | 624 | 8e-064 |
| Q9FKT4 KH domain-containing protein At5g56140 | 619 | 3e-063 |
| Q8GYR4 KH domain-containing protein At3g08620 | 614 | 1e-062 |
| Q9ZVI3 KH domain-containing protein At2g38610 | 599 | 6e-061 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9N0F3 Predicted protein | 931 | 3e-098 |
| A9PGS1 Predicted protein | 912 | 5e-096 |
| B9SKB5 Nucleic acid binding protein, putative | 907 | 2e-095 |
| B8AYB7 Putative uncharacterized protein | 831 | 1e-086 |
| Q60DW1 Os05g0419500 protein | 831 | 1e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G09660.1 KH domain-containing quaking protein, putative | 1281 | 4e-141 |
| AT1G09660.2 KH domain-containing quaking protein, putative | 1037 | 9e-113 |
| AT4G26480.1 KH domain-containing protein | 629 | 2e-065 |
| AT3G08620.1 KH domain-containing protein | 624 | 7e-065 |
| AT5G56140.1 KH domain-containing protein | 619 | 3e-064 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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