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Information for unigene UN08088

FASTA Sequence
Unigene ID: UN08088Length: 1267 SSR 
GGACAAACCCTCACTCAAATCGGAGAATTGTTGAGAAGAAAAGCACAAAGACATGAACTCATCTCTTCTAACTCCTTCCTCTTCTT
CTTCTTCTCCTCATCATCTCCAGTCTCCTGCAACGTTCGACCACGATGACTTCCTCCAAAACTTCTTCTCCTCCGCTCCTTGGCCT
TCCTCCGTGCTCGAAGACGACGCTCCTCCCCCCACCTCCGACACCGCCGTGGCTAGCTTTCACCATCACGACGTTGATTCAAGAAA
CCAGATCACGATGATTCCTTTGTCTCACCACAATCCAAACGACGCCGTTGATGTTAACGCCCTCTACAGTGGCTTCTCCGCTGGAT
CGCTTCCTTTCCACTTCCCTCAGGGATCGGGGGGAGGAGTTATGAAACAAAGTCACACGCCAACTCAGTCGCAGGCGACGGCGTCA
ACCACCACCGGTGGAACGGCGACGACTCCTCAGACTAAGCCTAAAGTCCGAGCTAGAAGAGGTCAAGCCACTGATCCTCACAGTAT
CGCCGAACGGTTACGAAGAGAGAGAATAGCTGAAAGGATGAAATCTCTTCAAGAACTTGTCCCTAATGGCAACAAGACAGACAAAG
CATCAATGCTCGATGAGATTATCGATTATGTCAAGTTCTTACAGCTCCAAGTCAAGGTACTAAGCATGAGTAGACTGGGAGGTGCT
GCTTCTGTTTCTTCTCAAATCTCTGAGGATGCCTGTGGGTCCCAGGAAAACACTTCCGGCGAGAATCAGACGGCAGCGAAAATGAC
GGAGCACCAAGTGGCCAAGCTAATGGAAGAGGACATGGGATCGGCCATGCAGTACCTACAAGGCAAAGGTCTATGCCTCATGCCCA
TATCCTTAGCCACCACCATCTCAACCGCTACTTGTCCTTCTCGTAATCCTCTGGTCTCAGCCGTTAAAGAAGCCGGCGTTCTTTTG
TCTCCTAACACAGCTACTACACCAGTCGTTGACGTTAAAGGTGCCTCGGTGGTTACCGTTAAAGACGCTTCATCAGTTTCCAAGCC
GTGATAACGGCAGTTTGAATCTAACTTTCCTTTTTTCGGGAGTTAGGCTGAGTGGGAAACAGAGTCAATGAAAAGTGGGGTTGGTG
GTTTTGGTCTAAGTCTAGAGAGAATAAGTGTTGCGTCTTGGAATACAACACCGTATTTGCGTTCACTTTGTTTCTGTCTTTTACCT
ACTACAAACCACTATCAATGTTATTTTGTATTAATCTAATATCTGCAACGGTTTTTGGTTTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAA18195 putative protein [Arabidopsis thaliana]12092e-130
NP_194827 transcription factor bHLH69 [Arabidopsis thaliana]11797e-127
AAM10956 putative bHLH transcription factor [Arabidopsis thaliana]11743e-126
XP_002867318 basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]8401e-087
XP_002880568 basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]7432e-076

Swiss-Prot top hits (Blast detail)Scoree value
Q8S3D5 Transcription factor bHLH6911902e-129
Q9ZUG9 Transcription factor bHLH667359e-077
Q93Y00 Transcription factor bHLH74445e-043
Q9LSQ3 Transcription factor bHLH824015e-038
O22768 Transcription factor UNE123334e-030

TrEMBL top hits (Blast detail)Scoree value
C0SVK8 Putative uncharacterized protein At4g30980 (Fragment)11795e-127
C0HIC0 Putative uncharacterized protein5576e-055
D6MK13 Transcription factor (Fragment)5513e-054
B6U846 BHLH transcription factor5012e-048
B8ALB2 Putative uncharacterized protein4932e-047

Arabidopsis top hits (Blast detail)Scoree value
AT4G30980.1 basic helix-loop-helix (bHLH) family protein11954e-131
AT2G24260.1 basic helix-loop-helix (bHLH) family protein7358e-078
AT1G03040.1 basic helix-loop-helix (bHLH) family protein4444e-044
AT5G58010.1 basic helix-loop-helix (bHLH) family protein4014e-039
AT4G02590.1 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor3333e-031

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  29%
 
203  43%
 
72  29%

Unigene MembersMember information