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Information for unigene UN08126
| FASTA Sequence |
| Unigene ID: UN08126 | Length: 1529 |
SSR | | CGCAACAAAGAAAAGATGAATCGTGATAAGTTATTGTTAACACAGACACTAGCATAGAGAAAGAAAAAAAAACATTCCAAAAAGCA
ACAAATATAAATAAGCACACTACAACTTCATATGAAATACTAAGACTCAGCATCAAGAGTGCCTGAACAACTTATTAAGAAGCTAA
CAAAAGAGGAGTTTCATGGTCAAAGATAAGACTACAATGTATAGTAGTCTTTCTTCCTCCAATCACTGTTGTAAAGCTTGATTACC
GCTTCCATAACCACCGCCATAACCAGCTTGCCCGTTCCCTTGGTGATTCCCATATCCATCTGAACCATCAGCATAGCCACCGCCAA
GGCTGTTAGGCCGCCCACCGACTGCACCATAACCAGATGAGTCCCATAAGAGGATCATCCCACCATATCCATAACTTGACCGCCAT
AACTGCAGATGCACTCCTTGACCCATCACTGCTGAACCAGGACCAGAACCGCCCCACGGAGCAGCATTTCCATATCCCACGTTACC
GTAACCAGACGGTGCTTGGCCTCCCCACGAACTTCTTGGACCACTTCCAAACCCAGCTCCAGGCACACCAGGATTCCCATAAGGCG
TACCAGATGGATTCCCATACCCTCCAAAACCCCCATAACCTACACCGTTGCTGCCATAACCATAACCAGCACCATAAGGAGGATAA
CCGCTTCCTCCAGCGTTTTGAGGCGGCATGTATCTACTTGAATCAAGACGACCCTCACCAGAGCCACCACCATAGCCCGGGAAACC
ACCACGACCACCACCGCCGGCTACCCCAGGATTAGCATCTTTAGGAAGAGCTCGTTTAACCTCTACTTGCTTCCCACTCAAATCAT
GGAAAGTCTTGTGCAAAACAAGGTCAACCGAATCTTCAGAGTCGAACGAGACAAACCCAAACCCTCTAGGCCGCTGCGTGGTCTGG
TCAATCATAATCACCGCATCGCTCACAGGGCCGTAACTCTCGAAGTAGGCCCTGAACTCATCAGACGTCAAAGCAGGAGGCAAACC
ACCAACAAATATCTTCTTGGTCCTAACGTTAGCACCACCACTATCAAAACTCCTAGAAGCACCACTAAAACTCCCTCCTCTACTAC
CACCACCACCACCAGGACTCTGCTCTTCTCTAGACATTGCTCTCTTCACATCAACATCTCTATTGTCGATGTGGTGCTTGCTCTGA
AGAACCCTATCGATGACGGCGGGATCGGAGAAGGAGACGAGGCCGAATCCCCTGGGACGGCTCGTGGCTTTCTCTCGCATGACTGT
GACCTGTGAAACCTCGCCGTAATTGGTGAAGTACTCTCTCAGGAGATTCTCGTCCGTGTCCCATGAAATCCCGCCGATGAAGAGCT
TCCCCTGATCTGATTCCATTGATTTGGTACCCAGAGAACCCTAGATTTGAACTAATCTCCCCGGTGAAGAAGAGAAATTAGGGTTT
GGGTTTGTGAAATCGAGTTAGAGAGAAAGAGAAGACAGAGTTGGGAGCTATTAGCCAATGGGGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879449 hypothetical protein ARALYDRAFT_482284 [Arabidopsis lyrata subsp. lyrata] | 1627 | 1e-178 |
| NP_180899 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1620 | 6e-178 |
| NP_193166 ribonucleoprotein 1 [Arabidopsis thaliana] | 1093 | 8e-117 |
| XP_002870323 hypothetical protein ARALYDRAFT_493480 [Arabidopsis lyrata subsp. lyrata] | 1073 | 2e-114 |
| NP_001168878 hypothetical protein LOC100382683 [Zea mays] | 955 | 8e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P51991 Heterogeneous nuclear ribonucleoprotein A3 | 471 | 5e-046 |
| Q96EP5 DAZ-associated protein 1 | 451 | 1e-043 |
| Q9JII5 DAZ-associated protein 1 | 451 | 1e-043 |
| Q98SJ2 DAZ-associated protein 1 | 450 | 1e-043 |
| P48810 Heterogeneous nuclear ribonucleoprotein 87F | 342 | 4e-031 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O22791 Putative RNA-binding protein | 1620 | 4e-178 |
| A5BK88 Putative uncharacterized protein | 1144 | 7e-123 |
| Q8W034 Ribonucleoprotein 1 (Fragment) | 1093 | 6e-117 |
| C0P9S2 Putative uncharacterized protein | 960 | 1e-101 |
| B9SQV8 Heterogeneous nuclear ribonucleoprotein 27C, putative | 927 | 1e-097 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1621 | 2e-180 |
| AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1093 | 3e-119 |
| AT4G26650.1 RNA recognition motif (RRM)-containing protein | 611 | 2e-063 |
| AT4G26650.2 RNA recognition motif (RRM)-containing protein | 611 | 2e-063 |
| AT5G55550.1 RNA recognition motif (RRM)-containing protein | 587 | 1e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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