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Information for unigene UN08188

FASTA Sequence
Unigene ID: UN08188Length: 1743 SSR 
GTCCAATGATGTATTTCATTTAGGAATTCTTAGGAAAAAAAAGGAAATTGTAGTAACAATCTCAAATGAAGTTACTGAAACTGAGA
AACAAGAAAAGAGTATCTAAACTTGGTCCTGGTATCAACAAGACACATGAAGAGTTACGATCTCGGTAAGAAACAAACAACAAAAC
ACGTTTCTTAACTCTAACAAAAACTAACCTAAGTGACATTCATATAGATCCATTCCAGAACTTGAAAAAGTAGAATAGTTCCCTCT
CTCCATCAGCTCTTGAAGTTGCTTTTGTTGCCTCCTGTTTTGAAGGATATTTCCTTTCTCCTTGTAAGGTTTAACAAGCACACGTG
AGTCACAGATGAAATGAGGGTTCCCACGAGCCAATATGGTTCTCACAGTTTCAGCATTGGCAAAAGTAGCAAACCCATACATCCTC
TGCTGCTGATATGGGATCCTCACATCTTCCACAGTTCCAAAGTCGCTGAAATAAGTGGAGACGTCTTCATCAGAAGAGAGTCAAGA
GTAAAACAATCTCAGAATCATCACTCTGACTCTCCTCTTCCTCCTCCTCACCACTCTCCACCTTAACCTCCCCTCTTCCAACCTCA
CCAACATCAGAAAAGACAAAAGCCTCAGTGTCTTCATAACCCAGTTCCATTAAAACACAGAACCCAGATTAAGAATCATACATATG
ATCAACAAAAATGATTATGGAGAATAAACTCAACAAAAATGATTTTAAGTCAAATATGAGCAACGAAACCAATAAAACCTTAGAGA
TTAGTACAATTTCAAATATCAGTTGGCTTTTGGCAAACATATCATCTCAGCATTACAATAATCTCTCTCATATATAACAAATTCTC
ATCAGGATTCATCTCAATTCCCATTTATAATATATATAAATAAAAATCACAAAGGAAATGATATTTAAAAAAAATTAGAGTTTGTT
TTCATTCAAGAACTAGAATCTGTGGAAGAACCTGAGACTCGAGGAGAAGTAACCGGAAACAGAGGAAGAAGACGAGGCTCTGAATC
CATCGGAGTTGTCGCCGGAGACGGATGCAAATAAAAGCCTTTCTCTTTCATCGCTTTCTCCTCAGCATCGTCGGGGCTTTGACTCG
ATGACCCGGATCGATCAAACGGGTCGGGTATAAGAGGAGTGACCGGGCTTAAAACGAGAGACGGGAAGTCGAGGATGCTTGGAGAG
AGGATCTCGGGTTTCCGGGGCGAGAAAACCGGGTTGAAAACCGGGTCTAACGGGTTGATTTTGAGATTCTTCATGGAGTTACGGCG
CTCGTAGAGACGGAACCCTGAGGAGGAGGAAGAAGACTGTTTCTTGTTTACGGCTTTGATTGCAGGGATTGAGAATTGGGAAGGGG
AGGATCTCGGGTCGGGTTGATGGGCCGGGTTGGGTTTAAGAGAGGAGGTGTTGTGTTGTTTGGGTCTGTCGGAAGATCCGGTTAGC
ATCTGGACGACTTGTTTGAATGAAGAGGTATCCGCTTGGACGAAAGTGGTAGGGTACGGGTTTCCAGATTCGGATCTGGTGGTTAC
GTGTCGGGTCGGAGTTATGGGTGGTTTGTTGTTGTGGCTATCAGTGCTGCTGTTCATACTGCAGCTGCTGTTGTTGTGGCATCGAG
GAGATGGAATCAGATTCGTTGAAGCATCTCTGTATCTGGGCGAGTTCTCCATTGAGATGATAGAGAGAGAGATTAGAGAAGAGAGA
GAGAGGGATTGTGTTTTGGTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002317494 predicted protein [Populus trichocarpa]4226e-039
XP_002891643 nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]4226e-039
NP_175563 RNA recognition motif-containing protein [Arabidopsis thaliana]4172e-038
NP_849792 RNA recognition motif-containing protein [Arabidopsis thaliana]4172e-038
BAF01116 hypothetical protein [Arabidopsis thaliana]3832e-034

Swiss-Prot top hits (Blast detail)Scoree value
Q94CJ8 Zinc finger CCCH domain-containing protein 553523e-032
Q0D3J9 Zinc finger CCCH domain-containing protein 532808e-024
Q9SV09 Zinc finger CCCH domain-containing protein 462791e-023
Q10LZ9 Zinc finger CCCH domain-containing protein 232781e-023
Q10M00 Zinc finger CCCH domain-containing protein 222682e-022

TrEMBL top hits (Blast detail)Scoree value
B9HZT6 Predicted protein4224e-039
Q3ECS2 Putative uncharacterized protein At1g51520.24172e-038
Q9C8K4 Putative uncharacterized protein At1g515204172e-038
Q0WP33 Putative uncharacterized protein At3g211003831e-034
Q9LJC2 Emb|CAB41315.13633e-032

Arabidopsis top hits (Blast detail)Scoree value
AT1G28280.1 VQ motif-containing protein10388e-113
AT1G28280.2 VQ motif-containing protein10154e-110
AT2G33780.1 VQ motif-containing protein4365e-043
AT1G51520.1 nucleic acid binding / nucleotide binding4179e-041
AT1G51520.2 nucleic acid binding / nucleotide binding4179e-041

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  50%
 
82  50%

Unigene MembersMember information