RadishBase

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Information for unigene UN08236

FASTA Sequence

Unigene ID: UN08236	Length: 1275		SNP
GGAACACTATTATATAATAGCTTTATAGATAAGTTGATAAAACCTTTTTCTTATACAAATAGTAATAGCTTGATTACGTCTCTTAC AAACGACCACAATATAACAAGCACCTAATAATAATAATACATTGACGACCAAGATGGAACACTTACAATACCATCTATTCACACAG TACCACTTTATCAGAATCCTCTCTGCTTTTTTCCAGCAGCCTTTTTTGGTGATGTTGTCTGCAGTACCGTTGATGCGCCCATCGAC CTGAGGTTCTCCAGCAAAGTGTCTCTCCCCGACAAGAGAATCTTGAAGAAGCAATCCACCTTCTTGGAAACAAGGTCTATCCCACT CGTTAACTCCGTGACCGAGTCCTTCAATGGCTGCAGCACGATGGGATCTATTGACCCTTGTTGGATCGCAGGAGCAAGTTCCTTAA CACCTGAATCAACAGCCTCGAGCTCTTTCATAACGGTTAAACCGTCAGATAAAAAGATGCTCTTGATCTCTGCGTTCATCGTGTTC TGCATTTGCATGAAGGATGGTGCCCATGGAAGATCGTTTGAGACCGTAACGTACAACAGGTTCTGCGATGAACCTGAGAAGGCAGC AGCGAAAACACCAGAAATGTACAAAGTCTTGACCTTGACACCGTAAAGAGCACGCATCAGGACTTTTCCTTTGGCAGAGTTTTTCA CCTTGGGGAGATTCAAGGTCTGAACAAGGCTGGTCAGGATTGAATGACAGCTTTCCAACCTCGGGTTCTTGGAAACGATGTGTCGC TTCCAGGAGTCGAGGGACGATTGAGCTTTGGAAAGATTCTGAGGAGCGTTCGTGTCCAAGTTATGCAAAGCAAACTGGAGAAAGAG ATGGCCTTGGTTGAGGCGGCTAAGCTCAGAGCTAAAGGCGTTGCAGAGGTCAAGGAGCTTGACGCTGATGTCTAGGTAGACATCGA CCCACTTGTCCCCCCAGTCAGAGACAGGAAGCTCAATAGCGGTTATAAGAGTCTTGATAGCATCGTGGGTCTGGCAAAGAGAAACC ATAGCTTGACTCATCCATGAAAGAGTGAGGATTTGGGACTTTTCCGTAGGGACAAGCTTTGAGATGGAAGAAGCTAAGTTGGTCTC GAAAGTGTTCAAGAGGGAGAGAAGCTTAGAGGATAGTACGGGGTTCTTGGAAGAGAGGTTCTTGAAAGGGTTTCCAAAAGGGAAGA AACCGCGTGGAGGGTCTTGTGGACGTGCCATCTTATAAAGTTTCAACTAAAGTGAAGAAGAACGAAACTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_563630 protein BPS1 [Arabidopsis thaliana]	1546	2e-169
XP_002892057 hypothetical protein ARALYDRAFT_470124 [Arabidopsis lyrata subsp. lyrata]	1527	3e-167
XP_002511905 conserved hypothetical protein [Ricinus communis]	969	2e-102
NP_566063 uncharacterized protein [Arabidopsis thaliana]	959	2e-101
XP_002882050 hypothetical protein ARALYDRAFT_904061 [Arabidopsis lyrata subsp. lyrata]	952	1e-100

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LMM6 Protein BPS1, chloroplastic	1552	2e-171
A2Z9A6 UPF0496 protein 4	580	8e-059
Q337C0 UPF0496 protein 4	572	7e-058

TrEMBL top hits (Blast detail)	Score	e value
B9RDW6 Putative uncharacterized protein	969	1e-102
O82360 Expressed protein	959	2e-101
Q93Z73 At2g46080/T3F17.27	951	1e-100
B9GQC2 Predicted protein	939	3e-099
C6THK9 Putative uncharacterized protein	939	3e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT1G01550.1 BPS1 (BYPASS 1)	1553	1e-172
AT1G01550.2 BPS1 (BYPASS 1)	1553	1e-172
AT2G46080.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: BPS1 (BYPASS 1) (TAIR:AT1G01550.2); Has 94 Blast hits to 83 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	959	8e-104
AT4G01360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: BPS1 (BYPASS 1) (TAIR:AT1G01550.2); Has 59 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).	769	9e-082
AT3G61500.1 unknown protein	257	2e-022

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	4			57%


9	3			43%

Unigene Members	Member information