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Information for unigene UN08269

FASTA Sequence
Unigene ID: UN08269Length: 1283  SNP
GGATAAGATTATGCTTCTGCCTATAAACCATCGGCAAATAAAAATTAAGATAAATAAGTTTTTAAGTTTATCATCCACAAAACACA
CACAAACAAACGGAAGGTTGCATAATAGTATTATCACAGGATTGATAAACACCAAAGAGTTTCTGTTAGTCTCTTAGGGAGAAATT
TATTACATCAACATCCTCTCCTTCTCAAGAGGACTCTGACCCTTCTCCCTCCTGGCCCTGGCCTTGGCCTTAAGCTTCTTAAGAGC
CCTGGCCTTAAGCTTCTTAAGGGCCCAGGCCTTAAGCTCCTTCCTAAGAGCCCAGGCCTTAAGCTTCTTAAGAGCCCCGGCCTTGG
GCTTCTTAAGAGCCTTGAGCTTAGGCTCCCTAAGAGTCCAGACCTTGTGCTTCTTAAGAGCCCTGAGCTTCTTTGTCATCGCATTG
AGCCTCCACTCAGTCATATAAAAATCGATCTTCTCCTGCATCTCCTCGCCAAACTCGAGCATATGAGCTGGGTAACAAGAGCCAAA
ATAAGTTTCATCAGGGGGAAGGGGAGTGTAACTACTGGCTGTTGTGGCTACGAGCGAAGTAGTTATTTTGAATCCGTCCACTTGAC
TTCCATCAAGAGCCATGGCACTAGCTTCTCCTTCTTCTTTGGAAAAATAGATATTAGTAAACTTGTACTGGAGATCAACGTAAACA
TGTGTTATCTCTCCACAAGAAGAGAAATGTGTAGTCAAAGCCTTCTCGACTTCATCTTCACGAAGGGAGGTGTCATACCCCTCAAC
GGAAATGCCAAACATAAATCTTTTGTCATATAATAGATCATCACCAAGAGCTTCTCTATAAGCTGATAACGCCAGGTATTCCTCAT
CCTCTTCCTCGGGTGCAATCTTGACAAGGGCATTCCAACCTCTCATGTTACTTCCATTAAGTTGCAACGCTTTCTCTTTTGCGACA
TGTGCATCATCACCATGTGCACGAAGAGTAACAAAAGCACGTCTGTCCAAAAGAGGCTCTCTGGGGAAATCAACTCTACTGTCACG
GCCACATGATTTGAAGAGATTAATCAATTCAATCCTGATTTCATCCTCAACGTACTTACAACACCTGAATCCTTCAACAGATATCC
TAACCCAGGGATTGGTGTAGTTCTCGAGGATGGCTTTTTGCTTAGCAGCAGCCTCACTATCAAACGGTGCCATGCAGGCGGTTACC
CTGCTAGCGTACGTGTCCTCCAACATGTCGTTATAAACCCTAGGCTGCCTGCCGCTTTGCGATATCTTTTCAGATTCCA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002893783 predicted protein [Arabidopsis lyrata subsp. lyrata]1832e-011
XP_002891463 hypothetical protein ARALYDRAFT_474037 [Arabidopsis lyrata subsp. lyrata]1482e-007
XP_002873095 predicted protein [Arabidopsis lyrata subsp. lyrata]1439e-007
XP_002882217 predicted protein [Arabidopsis lyrata subsp. lyrata]1421e-006
XP_002862284 predicted protein [Arabidopsis lyrata subsp. lyrata]1412e-006

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LZD9 Putative uncharacterized protein F12E4_2501401e-006
Q67YA0 Putative uncharacterized protein At5g035001347e-006
Q9FVQ1 NuM1 protein, putative1339e-006

Arabidopsis top hits (Blast detail)Scoree value
AT5G53700.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: nucleic acid binding / nucleotide binding (TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1712e-012
AT5G03480.1 nucleic acid binding / nucleotide binding1408e-009
AT5G03495.1 nucleotide binding1344e-008
AT1G48920.1 ATNUC-L1; nucleic acid binding / nucleotide binding1335e-008
AT5G05430.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has 23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1156e-006

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
107  47%
 
83  20%
 
75  33%

Unigene MembersMember information