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Information for unigene UN08296

FASTA Sequence
Unigene ID: UN08296Length: 598  SNP
GGACACCAAAAATGCAGATCTTTGTGAAAACCCTGACGGGGAAGACGATAACCCTAGAGGTCGAATCATCCGACACGATCGACAAT
GTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTCGAAGACGGGAG
GACGCTCGCGGACTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGCCTGAGAGGAGGAGCGAAGAAGAGGAAGAAGA
AGACGTACACGAAGCCGAAGAAGATCAAGCACAAGCACAAGAAGGTGAAGCTCGCGGTTCTGCAGTTTTACAAGGTTGATGGGACA
GGGAAGGTTCAGAGGCTGAGGAAAGAGTGTCCTTCGGTTAGTTGTGGTCCGGGAACTTTCATGGCGAGTCATTTCGATAGGCATTA
CTGTGGCAAGTGTGGAACCACTTATGTCTTCAAGAAGCCTGATGAAGAGTGATTAGTTGTTATGTGTTTTTTTTTTGCCTGCCTTT
TTATTATTGAATTATCGTATTGGAACTTATAATTGGCTTAATTCGGATTGGTTTCGTTTTATTGAGGTTTGCAACTTTTTTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002890580 hypothetical protein ARALYDRAFT_472603 [Arabidopsis lyrata subsp. lyrata]8082e-084
NP_173755 40S ribosomal protein S27a-1 [Arabidopsis thaliana]7992e-083
NP_191784 ubiquitin-40S ribosomal protein S27a-3 [Arabidopsis thaliana]7624e-079
NP_566095 ubiquitin-40S ribosomal protein S27a-2 [Arabidopsis thaliana]7624e-079
XP_002876668 hypothetical protein ARALYDRAFT_486730 [Arabidopsis lyrata subsp. lyrata]7615e-079

Swiss-Prot top hits (Blast detail)Scoree value
P59271 40S ribosomal protein S27a-14209e-041
P59232 40S ribosomal protein S27a-23832e-036
P59233 40S ribosomal protein S27a-33832e-036
P59263 Ubiquitin3795e-036
P69308 Ubiquitin3795e-036

TrEMBL top hits (Blast detail)Scoree value
A0MKC8 Ubiquitin extension protein7552e-078
C6T4R9 Putative uncharacterized protein7515e-078
Q6UCJ3 Ubiquitin extension protein7507e-078
B7FGN8 Putative uncharacterized protein7499e-078
Q06H21 Ubiquitin/ribosomal protein S27a7499e-078

Arabidopsis top hits (Blast detail)Scoree value
AT1G23410.1 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)8007e-086
AT2G47110.1 UBQ6; protein binding7622e-081
AT3G62250.1 UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome7622e-081
AT1G31340.1 RUB1 (RELATED TO UBIQUITIN 1); protein binding3804e-037
AT2G35635.1 UBQ7; protein binding3804e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  15%
 
123  23%
 
64  31%
 
73  23%
 
111  8%

Unigene MembersMember information