RadishBase

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Information for unigene UN08312

FASTA Sequence

Unigene ID: UN08312	Length: 1046	SSR
ATTTTGGTGCAAAATATATAGAGAAGCGATCACACGCATAGTAAGTTGTGATATCTAATTACAAATCAAACCTCTTCAAATACAAG TATCTTTAGATTTCCACAGAGCGGAAACATCTTGATATACAATGCAAAGCAAAGCGACAACGTTAAGACAAGAAGAAAACACATAA AGAGACTGGATGTTTCCTTTCTACAGTGACTAACCAAGAGAGAGAGCTCTCTTAAGCACAACATGATGAACTACTCACTGCAGTAG CTGCTGGCCCGCTTGGGAGAACCATTCCTGCTGGGTTTTCTGCTGGCTGTACACGTGGTAGCCTTTTTGCGATTTCGTAGAAGATG TCTTTGACATTTGTTGCAGTCTTAGCAGAGGTTTCCATGAAGAAAAGGCTGTTCTCTTGTGCGTACGTCTCTGCCTCCTCGGCAGA CACTTTCCTTGCATCCAATAAATCAGCTTTGTTTCCAGCAAGAGCCATCACCATATTAGGGTTACCTTGTGCCTGAAGTTCCTGAA CCCATTTCTTAGCCCTCTCAAATGAGGCTTGATTAGTGATGTCAAAGACAATAATGGCAGCAGCAGCACCCCGGTAGTACATAGGA GCCAAGCTATGGTAACGTTCCTGACCAGCAGTATCCCAAATCTCAAACTTGACAGTTGCATCATTGACAGCCAATGTTTGAGAGAA GAAGGCTGCACCTATCGTTGATTCCTGGAATTCAACAAACTGATCTTTGACGAATCGAAGCACAAGACTTGATTTTCCAGCTCCAA CATCCCCAAGCAATACCAATTTGGCGTTGATGTTCTTGTTTCCTCCAGCGGTGGTCATGATTGTTGATCTGTGAAGCTCCGGAAAT CCTCTGATCAACGAGAGATCGCAGATGAGAGATACGCGTTGACAATTCGAAAGCCGGAGAAGAGAGAGCCAAGAAGCTTTGACAAC ACACAACCGATTCCTCTTTCTCTCTCTCTCTCTGGGGCTCTTGATGACGATAGCAAAAAAGCAGCAGACGAGAAAACAATAGGACA AATATCATACGGCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_199326 Ras-related protein RHA1 [Arabidopsis thaliana]	957	3e-101
NP_193699 Ras-related small GTP-binding family protein [Arabidopsis thaliana]	903	5e-095
XP_002867930 hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp. lyrata]	902	7e-095
CAA50609 ras-related GTP-binding protein [Nicotiana tabacum]	877	5e-092
XP_002332129 predicted protein [Populus trichocarpa]	873	2e-091

Swiss-Prot top hits (Blast detail)	Score	e value
P31582 Ras-related protein RHA1	957	1e-102
P29687 Ras-related protein Rab5	796	6e-084
P31583 Ras-related protein RHN1	792	2e-083
Q98932 Ras-related protein Rab-5C	621	1e-063
Q0IIG7 Ras-related protein Rab-5A	620	1e-063

TrEMBL top hits (Blast detail)	Score	e value
Q9SN68 AT4g19640/F24J7_190	903	4e-095
Q40570 Ras-related GTP-binding protein	877	4e-092
B9NA46 Predicted protein	873	1e-091
A9P9C3 Putative uncharacterized protein	857	8e-090
B9ICG5 Predicted protein	847	1e-088

Arabidopsis top hits (Blast detail)	Score	e value
AT5G45130.1 RHA1 (RAB HOMOLOG 1); GTP binding	959	6e-104
AT4G19640.1 ARA7; GTP binding	905	1e-097
AT3G54840.1 ARA6; GTP binding / GTPase	529	5e-054
AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding	412	2e-040
AT1G06400.1 ARA-2; GTP binding	409	4e-040

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	11			79%


10	2			14%


9	1			7%

Unigene Members	Member information