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Information for unigene UN08315

FASTA Sequence
Unigene ID: UN08315Length: 996  SNP
GGCCCGAAAAGTCTATGTTCCTAATTTTGTACTTTGGCAAAACCAAACCTACTTCATAAAAATCTACGAATGCCCCATATGATCAG
TTCCAAATCTCTTTCTCTCTAAGTGCAAAAAAAGATATGTCTTCAATAGTTTCTGGTACAGTTCCAACCACCAAATCTTCTGCTTG
TTTCAGAAGAATCCAAAAATCTGCAACGTTTTCATCTCGGTCAATGTTGTTATCTTCTTCCTCATCACCACCTGCATCTGCAAAAC
TCCTAAACTCTGCCAATGGTTCTTCATCAAGTTCTTCATCTCCTAAACCCTTCAGACCCGTTATGCGCAGCAGAGAAGCTGATAAA
CTCGAAGAAGAAAGACTTCTCCACGTACAATGGCAAGACGTCACGGTAAAGATGGCAGTGGATGCACCAGCTTCCGTGGCTTACAA
GTTATATGCGGACCGTGAATTGTTCCCTAGGTGGATGCCCTTTTTGTCATCTGTTGAGGCAGTGGAGGGCAGTCCAGATTTATCGA
GGTATTTGGTGAAATTGGAATCTTTTGGAAATAAATTTGAATATTATTTTCTAGCAAAAAATTTAGAGCCAATCCAGGATCGAAAG
CTGCATTGGAGATCTATTGAAGGCTTTGCGAATAGAGGCAGTGTTCGATTTTTCCCTAGAGGCCCTTCTTCGTGCTTGGTAGAGAT
CAACTTTTCATTTGAAGTTCCACATGCTTTTGCCCCAGTTGCATTCTTAATGAAACCGTTTATGGAGAGGCTTATTCGTGGAGGAT
TGGAACGTTTTGCTGCCTTCGTGAAGACCACTTAAGGCATAAACAAACATTACGTTCTGTGCATTAATCCAAATAAACTGTTCTTT
TTATGTAGTGTGTTTTGTTTTTGCTTTTTGTTGGGAGGTAACATGTCCAAACATGATGTAATGTTGTTCTTGGTAAATTTACTATT
TATCAAAACAATTATTTGTTGAATATAATTCGAATGTATACGTTTTCACC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892110 hypothetical protein ARALYDRAFT_470207 [Arabidopsis lyrata subsp. lyrata]7673e-079
NP_563655 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]7413e-076
NP_001077451 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]7342e-075
AAM64518 unknown [Arabidopsis thaliana]6822e-069
NP_563656 SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana]5012e-048

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
A8MSF0 Uncharacterized protein At1g02470.27341e-075
Q8LBW6 Putative uncharacterized protein6821e-069
Q94K52 Putative uncharacterized protein At1g024755011e-048
B9RN77 Putative uncharacterized protein4931e-047
B9GSY3 Predicted protein4742e-045

Arabidopsis top hits (Blast detail)Scoree value
AT1G02470.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 276 Blast hits to 276 proteins in 86 species: Archae - 0; Bacteria - 162; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).7732e-082
AT1G02470.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 273 Blast hits to 273 proteins in 85 species: Archae - 0; Bacteria - 160; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).7615e-081
AT1G02475.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01883.1); Has 350 Blast hits to 350 proteins in 105 species: Archae - 0; Bacteria - 211; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).5026e-051
AT4G01883.1 LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02475.1); Has 320 Blast hits to 320 proteins in 96 species: Archae - 0; Bacteria - 186; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).4328e-043

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
124  29%
 
113  21%
 
71  7%
 
182  14%
 
62  14%
 
102  14%

Unigene MembersMember information