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Information for unigene UN08326
FASTA Sequence |
Unigene ID: UN08326 | Length: 1321 |
SSR | | AGCTTCTTAAAAGTAATATAGATTCAATTTATTCGGAAGTTTATGACAGATTCTGATACAATAAGAGAAAACAAACAAGCCTTTCT
AGTCTTTCTTCAATTCTCAAAACAAGATACAAAATGTACCAAGAAACATAGTTGGAGATGTGAGCTTTAGGGACATGGTTTCTAAG
TATGAGAAATGTTCTTGCCAAAGAGACCAGCTATGCCTTTCTCAGGGTCGTTTTGCTTCACAATGGACTCACCAACCAATACCGCT
TTAACTCCAGCGGCTTGTACATAGGCAATATCATCAGGTGTAAACAGACCAGATTCACCAACCACAATCATGTCTTTCTCGCGGAT
TTGTCTACCATGCTCCCCTTCAAGAAGCTTCTTTGTATTACTAATGTCCACCTTAAATGTTTCAAGACTGCGGTTATTGATGCCAA
CAAGCTCGATCCCTTCTATTCCAAGAACACGACCCATCTCTCTCTCATCGTGCACCTCAACAAGGGCAGCCAAACCAAGCTTCTTG
GAGAGCTTAAGCAAGTAGGTTATTTCCAGGTCAGTAAGTATTGCAGCAATGAGCAGTACTGCGTCCGCACCTTTAGTCCGAGCATA
GTAGATCTGCCATGGATCTACAACAAACTCTTTGCATAATAGGGGACACTTCACACCAGCGCTTCTTATTGCTTCCAAGTTTTCAA
ATCCTCCCTTGAAATACTTCTGGTCAGTCAAAACACTGAGACACGCTGCACCGCCTCTTTCATAAGCTTGAGCAATTTCGACCGGG
TCAAAATTATCTTTCAGGATTCCTCTACTAGGAGAAGCCTTCTTAACCTCAGCGATCAAAGCAGGGAAGCCAGTCCTTTGATGAGC
CATCCTAAGCGCACCCACAAAATCCCTAGTGGGAGGAGCATTCTCTACAGCTTTCTTTAACGCCTCAAGTGGGTTCATTTCATTCA
TCCTGGAAACTTCTTGGTCTTTGTACCAAGTAATCTCCTCCAAGATGTTACTGGGAGAATCAGCATTATGCAATCTCAGCTCAAAC
GGTCCAGAATAACCCAGTGGAGCCTTGCTTGGTGGTTTTCTCCTGATCCTGATACCTTGGCTAATAGCTAATTCATTCTGATACAT
GTCTACTTCCCATTCCTTGATTCTTAGATCATTCTCTACTGATGAAGAAGAAGAAGAAGCAACACCTAAGCTCTGTTGAGCCCGGA
TCGTGAACTGCGACGGAGCTTTGGAACTGATCCTTGTGTCCATGGCAAAACCTGAAACCGAACGTCTGATCGAGACAGAACCGATA
CACCGATAGAGAGACGGTGAGACCAGTCTCC
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GenBank top hits (Blast detail) | Score | e value |
AAM64536 putative indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 1695 | 1e-186 |
NP_178521 indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 1693 | 2e-186 |
XP_002883637 hypothetical protein ARALYDRAFT_480086 [Arabidopsis lyrata subsp. lyrata] | 1693 | 2e-186 |
AAA60380 indole-3-glycerol phosphate synthase [Arabidopsis thaliana] | 1603 | 5e-176 |
XP_002265275 PREDICTED: hypothetical protein [Vitis vinifera] | 1307 | 1e-141 |
Swiss-Prot top hits (Blast detail) | Score | e value |
P49572 Indole-3-glycerol phosphate synthase, chloroplastic | 1693 | 8e-188 |
B0JTM2 Indole-3-glycerol phosphate synthase | 779 | 7e-082 |
B7K0H0 Indole-3-glycerol phosphate synthase | 771 | 6e-081 |
Q55508 Indole-3-glycerol phosphate synthase | 762 | 7e-080 |
B8HP79 Indole-3-glycerol phosphate synthase | 734 | 1e-076 |
TrEMBL top hits (Blast detail) | Score | e value |
Q1EBW5 At2g04400 | 1693 | 1e-186 |
B9T1U0 Tryptophan biosynthesis protein, trpc, putative | 1276 | 3e-138 |
Q8GYM9 Putative indole-3-glycerol phosphate synthase | 1236 | 1e-133 |
Q9LUB2 AT5g48220/MIF21_11 | 1227 | 1e-132 |
B7FI09 Putative uncharacterized protein | 1194 | 9e-129 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G04400.1 indole-3-glycerol phosphate synthase (IGPS) | 1716 | 1e-191 |
AT5G48220.1 indole-3-glycerol phosphate synthase, putative | 1227 | 7e-135 |
AT5G48220.2 indole-3-glycerol phosphate synthase, putative | 1182 | 1e-129 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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